PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G149600.1.p
Common NameGLYMA_08G149600, LOC100811021
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 749aa    MW: 81008.8 Da    PI: 9.4681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G149600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-103280346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +W t+E++ll++av+++G  +W+++a +++     +  t+ +c  ++++
  Glyma.08G149600.1.p 32 AWGTWEELLLACAVNRHGFTDWDAVAMEVQsrttrLLATARHCEQKFHD 80
                         7*****************************9999999999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-42365IPR009057Homeodomain-like
SuperFamilySSF466899.87E-52865IPR009057Homeodomain-like
SMARTSM007170.00312984IPR001005SANT/Myb domain
CDDcd001671.79E-53264No hitNo description
PfamPF002491.4E-93280IPR001005SANT/Myb domain
SMARTSM002971.1E-14130455IPR001487Bromodomain
SuperFamilySSF473701.96E-19352455IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.4E-19352453IPR001487Bromodomain
CDDcd043691.30E-16359450No hitNo description
PfamPF004391.3E-10359437IPR001487Bromodomain
PROSITE profilePS5001414.914364436IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MENHQNHKVE PEPDIEKNHN HRHQQQQHRN EAWGTWEELL LACAVNRHGF TDWDAVAMEV  60
QSRTTRLLAT ARHCEQKFHD LSRRFAVQCN DDVPPPRQNG AAAAISDHVP WLDELRKLRV  120
AELRRDVQRS DVSILSLQLE VKRLEEEKAQ EKDLKDDEKP DLAVSGELRP ENDKTGGEVE  180
EAGPANSEPE ERTANNTDKT LPTTGDESDR ENQSVNESNS TGSRFEKTGD GDAKTGTGPD  240
PVHTGSQEPD PVERKGKPVG EESNNGSYDA LAKVPTCESV PPSEGRKVEE DDDSSELHDS  300
VAHSGEGGTR ESSEVQSSAS LMRKRKTRRR KEVSGATDAS CPAENDEAAT VKSEPLVGVL  360
ELIKGHEHSS LFERRLDSQQ DTDRYKDLVK QPMDLETIQL RLQKGHYSSC TSAFFRDLLL  420
LFTNATVFFS HDSLESQAGR QLHRLATAEM KNHGQAQSDP IPRKNDSLPP NAPLAKPDSL  480
LSKNKASGPI LVCRKRSSMS SKPSSATFGQ KGDQPVFNDK KERPSSDAKP PMKPSSSDTD  540
EEELPKAKEK PVTGARSLRR SNKNLNSNSS NNNNKKPSSI STPKAGSSGN KPSETVKPEK  600
SKAEGGADKK RSAAADFLKR IKRNTSAEAS KGGSGGGSGG GGGGGGGSSS SSKGGGGGNG  660
AKEQKKMVNN GKGDKGKERA SRHNNVGGGS GSADKRNNKN IENSSQSKRS VGRPPKKAAE  720
TNAGSAKRGR ENSASAGKDK RPKKRSKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321326MRKRKT
2321328MRKRKTRR
3324331RKTRRRKE
4637647SGGGGGGGGGS
5739747KRPKKRSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.600670.0hypocotyl| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G149600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585339.10.0hyphally regulated cell wall protein 1 isoform X1
TrEMBLI1KTI10.0I1KTI1_SOYBN; Uncharacterized protein
STRINGGLYMA08G15870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.19e-80DNA-binding bromodomain-containing protein