PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 284aa MW: 32008.2 Da PI: 7.4041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G148500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.9e-09	7	56	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+i +++ +k+L Glyma.08G148500.1.p 7 RKTQKADREKLRRDRLNEQFVELGNILDPD----RPKNDKATIIGDTIQLLKDL 56 6788999******************997....79***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-13	5	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-12	6	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.544	6	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	7	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.09E-7	7	61	No hit	No description
SMART	SM00353	7.8E-6	12	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDCSAARKTQ KADREKLRRD RLNEQFVELG NILDPDRPKN DKATIIGDTI QLLKDLTSQV 60 SKLKDEYATL NEESRELTQE KNDLREEKAS LKSDIGNLNN QYQQQLRTMF PWTAMDHSVM 120 MAPPSYPYPV PMAVPPGPIP MQPYPFFANQ HPAVISNPCS TYVPYLAPNT IVEQQSTQYV 180 SPPLHPCGRS NVSGKQESKS KSSRESKAEK NEDSNDVTTD LELKTPGSSA DQVSVVFQGY 240 PMIEDALDSS CVCLWFAGFI IQTKKIQQVV KEGKQLHRRK FIR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.37138	0.0	cotyledon\| meristem\| somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G148500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094437	0.0	BT094437.1 Soybean clone JCVI-FLGm-24H6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003531414.1	1e-173	transcription factor bHLH121
Refseq	XP_014634451.1	1e-173	transcription factor bHLH121
Refseq	XP_028243910.1	1e-173	transcription factor bHLH121
Refseq	XP_028243911.1	1e-173	transcription factor bHLH121
Swissprot	Q9LT23	4e-93	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A445JET3	0.0	A0A445JET3_GLYSO; Transcription factor bHLH121 isoform A
TrEMBL	I1KTH1	0.0	I1KTH1_SOYBN; Uncharacterized protein
STRING	GLYMA08G15740.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76
Representative plant	OGRP3401	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	5e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G148500.1.p

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]