PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G145300.1.p
Common NameGLYMA_08G145300, LOC100792946
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 297aa    MW: 33168.7 Da    PI: 9.3364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G145300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20159208255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a+++a ++++g
  Glyma.08G145300.1.p 159 KYRGVRQRP-WGKWAAEIRDPL----KaRRVWLGTFETAEDAARAYDQASLRFRG 208
                          8********.**********73....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-33158217IPR001471AP2/ERF domain
PROSITE profilePS5103225.146159216IPR001471AP2/ERF domain
PfamPF008471.9E-13159208IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23159217IPR016177DNA-binding domain
SMARTSM003807.5E-36159222IPR001471AP2/ERF domain
CDDcd000188.82E-33160218No hitNo description
PRINTSPR003677.2E-12160171IPR001471AP2/ERF domain
PRINTSPR003677.2E-12182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMKNDREKGN EVDQSYIQQH HSLSMPMMFS GFNREKEMSA MITALTRVVC GDYSLVHHNI  60
DNTNSAIVGG GGGDDVSNMA SGSMPPSSTS LSHGGNSVLK RRREDDNTSD FLRGGSFPAI  120
LTTAEGSSTI RRRRANTVYD YEYRREKVKV EEEEEARRKY RGVRQRPWGK WAAEIRDPLK  180
ARRVWLGTFE TAEDAARAYD QASLRFRGNK AKLNFPENVR LRHTETLQGS RASSNFYDNS  240
YSHVHDLPVS LYDQTTMASS STISMTSPQA PPSIYPTHLL PAWSSGYAYN SSSSSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23160219666ATERF1
3gcc_A1e-23160219666ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G145300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956910.0BT095691.1 Soybean clone JCVI-FLGm-25E4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634447.10.0ethylene-responsive transcription factor ERF112
TrEMBLI1KTD50.0I1KTD5_SOYBN; Uncharacterized protein
STRINGGLYMA08G15350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-30ERF family protein