PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 207aa MW: 23028.2 Da PI: 7.2918

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G124200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.2	5.5e-33	111	167	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k+ +++rkpylheSRhkhAlrRpRg+gGrF Glyma.08G124200.2.p 111 EEPVFVNAKQYHGILRRRQSRAKAESENKV-IRNRKPYLHESRHKHALRRPRGCGGRF 167 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.6E-37	109	170	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.788	110	170	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.0E-28	112	167	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-24	113	135	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	115	135	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.3E-24	144	167	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MTSAHDLTDN EDDGQQQSES QIQSPSANGI SDPDISTQNV NVQYATPGQL GTGHAMVPPV 60 YPYPDPYYRS IFAPYDTQPY PPQAYSGQPM VHLQLMGIQQ AGVPLPTDAV EEPVFVNAKQ 120 YHGILRRRQS RAKAESENKV IRNRKPYLHE SRHKHALRRP RGCGGRFLNS KKDENQHDDV 180 TSADKSQSNI NLNSNKNDQT SSDRTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-22	110	177	1	68	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	160	RHKHALRRPR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22381	0.0	flower\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G124200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT089415	0.0	BT089415.1 Soybean clone JCVI-FLGm-1L22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235566.2	1e-152	putative CCAAT-binding transcription factor
Refseq	XP_028243632.1	1e-152	nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	3e-72	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A445JDN1	1e-150	A0A445JDN1_GLYSO; Nuclear transcription factor Y subunit A-7 isoform B (Fragment)
TrEMBL	A0A445JDP0	1e-151	A0A445JDP0_GLYSO; Nuclear transcription factor Y subunit A-7 isoform A
TrEMBL	I1KSM7	1e-151	I1KSM7_SOYBN; Uncharacterized protein
STRING	GLYMA08G13090.1	1e-152	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-61	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Glyma.08G124200.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]