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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.08G120600.1.p |
Common Name | GLYMA_08G120600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MIKC_MADS |
Protein Properties |
Length: 244aa MW: 27591.1 Da PI: 10.2577 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.08G120600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 95.8 | 1.9e-30 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
Glyma.08G120600.1.p 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
79***********************************************8 PP
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2 | K-box | 110 | 2.5e-36 | 93 | 190 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92
ssg + ++ea+a+ +qqe+akL+ +i+nLq+ +R+++Ge+L++++ k+L++Le++Lek++++iRskKne+l+++ie+++k+e l+++n+
Glyma.08G120600.1.p 93 SSGGRsASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKREIYLHNDNQ 182
44444599********************************************************************************** PP
K-box 93 aLrkklee 100
Lr+k+ e
Glyma.08G120600.1.p 183 LLRAKIGE 190
*****965 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.726 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-42 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-32 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.19E-42 | 18 | 87 | No hit | No description |
PRINTS | PR00404 | 2.6E-32 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-26 | 101 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.597 | 104 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MAFPNQSMSS ESPQRKMGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKA SIERYKKASS DSSSGGRSAS EANAQFYQQE AAKLRVQISN 120 LQNHNRQMMG EGLSTMNGKD LKNLETKLEK GISRIRSKKN EMLFAEIEHM KKREIYLHND 180 NQLLRAKIGE GERSHHNVNG LSGTTSYESM QSQFDSRGFF QVTGLQPNNN NQYAGQDMSL 240 QFV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |