PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G119900.3.p
Common NameGLYMA_08G119900, LOC100817602
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 403aa    MW: 45953.1 Da    PI: 4.8561
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G119900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34141052102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d+++++++sws +++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgFkkv+ e+         weF+++ F +g+ 
  Glyma.08G119900.3.p  14 FLAKTYEMVDDPSTDSVVSWSVTSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQ---------WEFANDDFVRGQP 94 
                          9********************999****************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +l+++i+r+k 
  Glyma.08G119900.3.p  95 HLMKNIHRRKP 105
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.28E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.2E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDDAQGSSNS LPPFLAKTYE MVDDPSTDSV VSWSVTSKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFKKVDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPL  120
GESERQSFTD EIEKLKHDKE QLLVELQKYQ HEWQAYEIQI HCSKDRLEKL EQNQQRMVSS  180
VSHVLQKPVI SVNILPLTET LDRKRRLPRS GHFYDEDGVE DAIETCQMLP RENADHTTVL  240
TLNVERLDQL ESSMAFWEAI VHDIGDTFVQ IQSSMDLDES TSCADSPSLS CAQLDVEVRH  300
KSPGIDMNSE PTTAAVPEPV ASKEQPAGTT VAATGVNDVF WEQFLTEDPG ASETREVQSE  360
RKDYEGRKNE GKPSDLNKFW WNKRNANNLP EQMGHVGQAE KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-24410320129Heat shock factor protein 1
5d5v_B5e-24410320129Heat shock factor protein 1
5d5v_D5e-24410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206DRKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.215770.0cotyledon| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G119900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526270.0AY052627.1 Phaseolus acutifolius heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340357.10.0heat stress transcription factor 13
RefseqXP_028243604.10.0heat stress transcription factor A-4a-like
SwissprotO494031e-127HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A445JDG00.0A0A445JDG0_GLYSO; Heat stress transcription factor A-4a isoform A
TrEMBLK7L6610.0K7L661_SOYBN; Uncharacterized protein
STRINGGLYMA08G12630.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-128heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]