PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G110200.1.p
Common NameGLYMA_08G110200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 394aa    MW: 44845.8 Da    PI: 6.1927
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G110200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.3e-13109153247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + WT eE+ +++ a  + G+g+W tI++++g +++  q+ s+ qky
  Glyma.08G110200.1.p 109 LQWTVEEHMKFLVALDEVGKGDWITISKHIG-TKSSTQVASHAQKY 153
                          57*****************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-7101161IPR009057Homeodomain-like
PROSITE profilePS5129414.004103158IPR017930Myb domain
SuperFamilySSF466891.56E-13105158IPR009057Homeodomain-like
SMARTSM007173.7E-7107156IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.5E-11108157IPR006447Myb domain, plants
PfamPF002491.1E-10110153IPR001005SANT/Myb domain
CDDcd001673.85E-8111153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MFGFSQQHNN VDNNGGTSSL SDDEDDLTRF FDYDTAPGQN LDELFAPSIV TQLPPMLPAE  60
ATQHHHTLPQ HVNQIVSSSP VDLPSHVPIE ALVQQNGGSS VQRQRGKGLQ WTVEEHMKFL  120
VALDEVGKGD WITISKHIGT KSSTQVASHA QKYYLRQKAK KKIRKSIHDI TLNTISHQDD  180
TQNSTPHPDP EIQPVHEIHQ MQEMPPNSMT HQMSGFEYFA NQQVHEIQQM QDILSVYPSN  240
NITHQMGGFE HFVNQQVHEM PVYPPNNMTH QMSGFEHFAN QQVHEMQQMQ DILSMYPSNN  300
MIHQMNGSEY FVNQQVHEMP VHPPNNMTHQ MSGFQYLANQ QVHKIQQMQD ILPAYPSNNM  360
THQMSGFECS NKDFGRGCYK PEYPPNNTSS SNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G110200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6238540.0EF623854.1 Glycine max cultivar Williams 82 clone BAC 77G7-a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7L6090.0K7L609_SOYBN; Uncharacterized protein
STRINGGLYMA08G11541.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3564622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.17e-22MYB family protein