 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.08G105500.1.p |
Common Name | GLYMA_08G105500, LOC100778931 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
MIKC_MADS |
Protein Properties |
Length: 245aa MW: 27901.8 Da PI: 8.8308 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.08G105500.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
Glyma.08G105500.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
|
2 | K-box | 95.8 | 6.8e-32 | 93 | 174 | 16 | 97 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
s+qqe+ kLk+++e+Lqr+qR+l+GedL++Ls keL++Le+qL++slk+iRs++++++l+q+++lq+ke+ l+e+n++Lr++
Glyma.08G105500.1.p 93 SSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQR 174
689*****************************************************************************96 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-33 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.11E-45 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.891 | 91 | 182 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.9E-26 | 93 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPEA NVSTREALVM ELSSQQEYLK LKARYESLQR SQRNLMGEDL 120 GPLSSKELES LERQLDSSLK QIRSTRTQFM LDQLSDLQRK EHLLSEANRS LRQRQLEGYQ 180 INPLQLNPGV EEMGYGRNPA QTHGEALFQQ MECEPTLQIG YQPDPVSVVT AGPSMSNYMA 240 GWLP*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 1e-48 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-48 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-48 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-48 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: During seed development, highest expression is found in the seed coat of young seeds. Expression decreases steadily during further seed development but is detectable until desiccation begins. {ECO:0000269|PubMed:9869431}. |
Uniprot | TISSUE SPECIFICITY: Expressed abundantly in the seed coat and to lesser extent in young buds, carpels, petals, and stamen. {ECO:0000269|PubMed:9869431}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000269|PubMed:9869431}. |