PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G100900.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 511aa    MW: 57545.2 Da    PI: 4.8686
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G100900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.32e-24130183155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Glyma.08G100900.1.p 130 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 183
                          68*******************.9*******************************8 PP
2Response_reg333.1e-1215653109
                          CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Glyma.08G100900.1.p   1 MPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 
                          9************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.59E-12162No hitNo description
PROSITE profilePS5011024.176162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.28E-15170IPR011006CheY-like superfamily
PfamPF000723.7E-9157IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.9E-21193No hitNo description
SuperFamilySSF466893.23E-17128187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-28129188IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-21130183IPR006447Myb domain, plants
PfamPF002491.5E-7132182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MPDMDGFKLL EQVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VFRKRMHEAR DFESHEGFDF EGIHLMRNGS DHSDDGNLFA VEETTSIKKR KDADNKHDDK  120
EFGDHFPTKK ARVVWSVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT RENVASHLQK  180
YRLYLSRLQK ENDQKSSSSG IKHSDSPSKD LGSFSFLNTA NKQQNDIATD SFSYSDGTLL  240
IQMDATSYEG DLKGIVSEPT TEKRRASTSE IPDPKVQKSS QKSLNKPFTS VESSEANHAV  300
FDCTIPTEYS WSEFPKGPLK EEQKTPVQLE DSLCQLPLHG TQHHIQIDQS QSIASINSNP  360
SITEEEVAAK LETKPLYAGY ESDYVNPVSS IGSAVEAFRS QSKSLMVSDQ SSEPTFTSNL  420
SLKTQGFNLD CISDLDFYQR NLLLGGEVAS APLDEDLNFF LLQSECYNMN FGLQNIDMSE  480
YYDPRLTAEV PSHFYDSADY SSVDQSLFIA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17129188463ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G100900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634317.10.0two-component response regulator ORR26
TrEMBLA0A0R0IRI50.0A0A0R0IRI5_SOYBN; Uncharacterized protein
STRINGGLYMA08G10650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-79response regulator 11