PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G100100.1.p
Common NameGLYMA_08G100100, LOC100806203
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 906aa    MW: 100355 Da    PI: 6.6448
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G100100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Glyma.08G100100.1.p 127 FCKILTASDTSTHGGFSVPRRAAEKVfppldfSQQPPCQ-ELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 214
                          99*****************************86666675.9************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++ +l+++++r+
  Glyma.08G100100.1.p 215 -WNEKNQLLLGIRRA 228
                          .8899999****997 PP
2Auxin_resp120.11.8e-39253336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld++rWpnS+Wrs+k
  Glyma.08G100100.1.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSIRWPNSHWRSVK 336
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.15E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.40E-23126227No hitNo description
SMARTSM010193.0E-25127229IPR003340B3 DNA binding domain
PfamPF023623.2E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028127229IPR003340B3 DNA binding domain
PfamPF065071.4E-34253336IPR010525Auxin response factor
SuperFamilySSF542771.05E-6774854No hitNo description
PfamPF023091.1E-6775863IPR033389AUX/IAA domain
PROSITE profilePS5174522.736778862IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MKLSSPGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE  60
VDGHIPNYPS LPPQLICQLH NLTMHADTET DEVYAQMTLQ PLNPQEQKGA YLPAELGTPS  120
KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSIRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPLFHAGLKD DDFGINSSLM WLRDTDRGLP SLNFQGIGVS  420
PWMQPRLDPS MVNYQSDMYQ AMAAAALQDM WTSNPSKQHP TSSIQFQQPQ NFPNQTSPLM  480
QTQLLQQSPS QQAFPNSQEN PHPSPSQSQA QTQTHFQQHL QHQHSFNNQN QHHLLPQQQQ  540
QPQQPQLQQQ QVVDHQQISS VVSTMSQFVS AAQSQSPPMQ AISSLGHQQS FSDSNGNPTT  600
TAIVSPLHSI LDSFPQDDTS HLLSLPRSTS WVPVQHSTAW PPSKRVVVDP LLSSGASQCV  660
LPQVEQLGQP HSTMAQNGIA LPAFPGRECT IEGSNDPQNH LLFGVNIEPS SLLMHNGMSS  720
LKGVSSNSDS PTIPFQSSNY LNTTGPDSSL NPGMTHNIGE TGFLQTPENG GQGNPSNKTF  780
VKVYKSGSFG RSLDITKFTS YPELRSELAR MFGLEGELED PVRSGWQLVF VDQENDVLLL  840
GDGPWPEFVN SVGYIKILSP QEVQQMGNNE LELLNSVPIQ RLSNGVCEDP RNLSTGITTV  900
GSLNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581335743388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.587320.0hypocotyl| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G100100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585093.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLI1KRX20.0I1KRX2_SOYBN; Auxin response factor
STRINGGLYMA08G10550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]