PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 252aa MW: 27058.1 Da PI: 6.8578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G094200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Glyma.08G094200.2.p 95 FSCNYCRRKFYSSQALGGHQNAH 117 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.76E-6	93	123	No hit	No description
PROSITE profile	PS50157	11.385	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MMTPNLNLEI ENHSEGSSQV ASNVSLHEAS HDLTKGSTTT SSCLTKDETD PGFITLDLTL 60 NFNNSGDGEL KVSSDASSEV GAEAPASASA TPRVFSCNYC RRKFYSSQAL GGHQNAHKRE 120 RTMAKRAMRM GMFTERFTSL ASLPLHGSPF RSLGLEAHSA MHRRHVPSSV TALRAPDMRA 180 AAKFERNQFG SLVFMEDDDV GFFWPGSFRQ VDQQGAGDVN VGHAQSSNAS LAPMVPPPPQ 240 ASASPDLTLK L*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.2831	0.0	cotyledon\| hypocotyl\| leaf\| meristem\| root\| stem\| vegetative bud

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G094200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098057	0.0	BT098057.1 Soybean clone JCVI-FLGm-11P18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001241172.1	0.0	uncharacterized protein LOC100791723
Refseq	XP_028243328.1	0.0	zinc finger protein 4-like
Swissprot	Q39263	3e-38	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A445JCL9	0.0	A0A445JCL9_GLYSO; Zinc finger protein 4
TrEMBL	C6TK52	0.0	C6TK52_SOYBN; Uncharacterized protein
STRING	GLYMA08G09970.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-40	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Glyma.08G094200.2.p
Entrez Gene	100791723

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]