PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G083900.1.p
Common NameGLYMA_08G083900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31193.8 Da    PI: 6.5169
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G083900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.2e-151562148
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                         k+ie+k   q t++kR+ gi KKA+EL +LC+a+v +++f s+gk   
  Glyma.08G083900.1.p 15 KKIEDKKDLQKTLAKRKCGIYKKASELTTLCGAKVDMLMFTSSGKWLS 62
                         689*****************************************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.946767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-17872IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-13929IPR002100Transcription factor, MADS-box
PfamPF003197.9E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEGGNTKRKQ KREIKKIEDK KDLQKTLAKR KCGIYKKASE LTTLCGAKVD MLMFTSSGKW  60
LSYGEPSHQA NIRSSDEEND PTKDDINEPV EDHAKSKIDE LCEKNKALIH QLHYEEEREN  120
KLVEIMKTRN THGWWEAKIQ DLNCEKAKEL EASFVELKKK LENELSVKQG DNGKSSHGSN  180
LSEVIFGANN DARGISTSES IFPDISFSPI NEGGVFTFYP YGERREDLFD IVYPPTNQAR  240
GHNLFVNDAN ASSNHTHVAS SSKNSQENIP HLPNAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G083900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242380.10.0agamous-like MADS-box protein AGL23
TrEMBLA0A0R0IIX90.0A0A0R0IIX9_SOYBN; Uncharacterized protein
STRINGGLYMA08G08870.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1822966
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28450.14e-18AGAMOUS-like 58