PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G075300.1.p | ||||||||
Common Name | GLYMA_08G075300, LOC100788893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 191aa MW: 22112.6 Da PI: 4.6191 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.8 | 4.5e-36 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ ++ ae k+wy++s+r +nr+t++gyW g ++ Glyma.08G075300.1.p 8 LPPGFRFYPTDEELVVHFLQRKANLLPCHP-DVIPDLELYPYDPWELHGRALAEGKQWYYYSRRT--------QNRVTSNGYWMPMGMEE 88 79*************************999.99**************97777889*******984........58*************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s+ +++ vg+kk vf+ g+ap+g+ t+W+m+eyrl Glyma.08G075300.1.p 89 PVISNsSNKRVGMKKYYVFHLGEAPDGNTTNWIMQEYRL 127 **99867778***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-47 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.343 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-22 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA NLLPCHPDVI PDLELYPYDP WELHGRALAE 60 GKQWYYYSRR TQNRVTSNGY WMPMGMEEPV ISNSSNKRVG MKKYYVFHLG EAPDGNTTNW 120 IMQEYRLLDS ASSSISSRRR SQPKPDHSKW VICRVYERDN DEDDGDGTEL SCLDEVFLSL 180 DDLDEISLPN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-40 | 4 | 160 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-40 | 4 | 160 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-40 | 4 | 160 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-40 | 4 | 160 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-40 | 4 | 160 | 16 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-40 | 4 | 160 | 13 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-40 | 4 | 160 | 13 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G075300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-120 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003531051.1 | 1e-141 | NAC domain-containing protein 104 | ||||
Refseq | XP_028247050.1 | 1e-141 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 1e-86 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A0B2S4H5 | 1e-140 | A0A0B2S4H5_GLYSO; NAC domain-containing protein 104 | ||||
TrEMBL | I1KR61 | 1e-140 | I1KR61_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G08010.1 | 1e-141 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 | Representative plant | OGRP4510 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-87 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G075300.1.p |
Entrez Gene | 100788893 |
Publications ? help Back to Top | |||
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