PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 153aa MW: 16913.9 Da PI: 9.3111

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G056700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	86.2	3.4e-27	17	65	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eCl+NhAaslG++a+DGCgEf+ + g a +l+CaACgCHRnFHR+ + Glyma.08G056700.1.p 17 SVYRECLRNHAASLGSYATDGCGEFTVD-G----AGGLQCAACGCHRNFHRKVK 65 68***********************8.3....569************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.0E-23	18	64	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.586	19	64	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.8E-21	19	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-10	19	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	7.7E-27	70	137	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-14	71	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.3E-29	77	135	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MEGGSGGGER EKWNSVSVYR ECLRNHAASL GSYATDGCGE FTVDGAGGLQ CAACGCHRNF 60 HRKVKYPVAE HEEYGGKKRF RSKFTADQKE KMLGFAEKLG WKLQRKDLND EIERFCRSVG 120 VSRQVFKVWM HNHKNSSSSS SSTPANVSSL TQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-23	78	140	18	79	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.56066	0.0	cotyledon

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G056700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	4e-62	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003532548.1	1e-110	zinc-finger homeodomain protein 5
Refseq	XP_028247263.1	1e-110	zinc-finger homeodomain protein 5-like isoform X1
Refseq	XP_028247264.1	1e-110	zinc-finger homeodomain protein 5-like isoform X2
Swissprot	Q9SB61	8e-38	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A445JAF8	1e-109	A0A445JAF8_GLYSO; Zinc-finger homeodomain protein 2
TrEMBL	I1KQN0	1e-109	I1KQN0_SOYBN; Uncharacterized protein
STRING	GLYMA08G06120.1	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-29	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.08G056700.1.p
Entrez Gene	100801620

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]