PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G042900.1.p
Common NameGLYMA_08G042900, LOC100779271
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 465aa    MW: 51383.1 Da    PI: 5.9984
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G042900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091110129120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp+C+++F++ ++   H 
  Glyma.08G042900.1.p 110 FECPICKQPFRSEEEVSAHV 129
                          89***********9999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd092128.19E-20169259No hitNo description
SuperFamilySSF1435037.06E-18174259IPR018997PUB domain
SMARTSM005801.6E-20176243IPR018997PUB domain
PfamPF094093.0E-16176248IPR018997PUB domain
SuperFamilySSF542361.78E-13325437IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.5E-8352437No hitNo description
PROSITE profilePS5003310.578353437IPR001012UBX domain
PfamPF007891.0E-4354404IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDDVKDKVKG FMKKVNNPFS SSSSAKFKGQ GRVLGSSSST PANSNPTPRP YPNSQKPSSS  60
SAVTNPKPSP QKTEQNKTTD KPRKDDGFDP FDSLVTNSNR SQNGYSLNVF ECPICKQPFR  120
SEEEVSAHVD GCLNNPVERG SDDGNGVSES DGGSNDTNTE LEVCVGTYIS GKPSEGSVDV  180
ILKLLRNIGR EPENVKFRRI RMNNPKIKEA VGDVAGGVEL LSFVGFELRE ENGETWAVME  240
FPSEEQIKFI QRAIVLLESQ LVQQGPPKRD DLPSATSTEM GPKAETKPVD RQVKVFFAVP  300
ESVAAKIELP DSFYKLSAEE VRREAELRRK KIADSQLLIP KSLKEKQAKV SRKRYTKTII  360
RIQFPDGVVL QGVFAPWETT IALYEFVSSA LKEPGLEFEL MHPVLIQRRV IPHFPKAGEN  420
AKTIEEEDLV PSALIKFKPL ETDSVVFTGL RNELLEISEP LVNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifw_A2e-1430443719146Tether containing UBX domain for GLUT4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.604090.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G042900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353900.0AC235390.1 Glycine max strain Williams 82 clone GM_WBb0116B02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530725.10.0plant UBX domain-containing protein 2
RefseqXP_006584861.10.0plant UBX domain-containing protein 2
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLI1KQ730.0I1KQ73_SOYBN; Uncharacterized protein
STRINGGLYMA08G04760.60.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529
Representative plantOGRP604723
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]