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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.08G042100.1.p |
Common Name | GLYMA_08G042100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 313aa MW: 36348.6 Da PI: 7.6173 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.08G042100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd ll +++ +G g+W++ a++ g++Rt+k+c++rw++yl
Glyma.08G042100.1.p 19 RGPWTLEEDNLLSQYIFNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 66
89********************************************97 PP
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2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T++E++++++++ ++G++ W++Ia++++ gRt++++k++w++
Glyma.08G042100.1.p 72 RGNLTPQEQLIILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115
7999******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MSTSKSVSSS SEDDNELRRG PWTLEEDNLL SQYIFNHGEG RWNLLAKRSG LKRTGKSCRL 60 RWLNYLKPDV KRGNLTPQEQ LIILELHSKW GNRWSKIAQH LPGRTDNEIK NYWRTRIQKQ 120 ARHLKIYTDS REFQELVRRF WMPRLLQKAK ESSSSNMSIQ NQAIPMPFDY VSQHLTVGTI 180 PPWQGPCMNE AGPTYMDQHE QNSDSEHNNG SCISLSESAN IPKVPQHFGH TTITQFHALN 240 TNDFGTFTYE GYNVNNNVYE MDNFKTTTTW VAEDAQYPIG DCQMVGSNWV NNDFACNMWN 300 MDELWQFSKL QK*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.18049 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT094181 | 0.0 | BT094181.1 Soybean clone JCVI-FLGm-18E16 unknown mRNA. |
GenBank | JX090252 | 0.0 | JX090252.1 Glycine max ecotype Gwangan Myb transcription factor mRNA, complete cds. |