PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G041100.1.p
Common NameGLYMA_08G041100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 372aa    MW: 41544.3 Da    PI: 6.1475
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G041100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.13.7e-081558340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  Glyma.08G041100.1.p 15 ARACDSCVSRRARWFCAADDAFLCHACDTLVHSAnqlasrHERV 58
                         578*****************************657788888876 PP
2CCT66.85.9e-23316358143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+
  Glyma.08G041100.1.p 316 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 358
                          9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6231360IPR000315B-box-type zinc finger
SMARTSM003361.5E-91360IPR000315B-box-type zinc finger
PfamPF006437.3E-71558IPR000315B-box-type zinc finger
CDDcd000211.74E-91660No hitNo description
PROSITE profilePS5101715.993316358IPR010402CCT domain
PfamPF062038.1E-18316358IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MRDMKDAGAL GGKTARACDS CVSRRARWFC AADDAFLCHA CDTLVHSANQ LASRHERVRL  60
QTASSKATTT TTHAWHSGFT RKARTPRHNN SKHFALQQRL KHEVLFNNTS VLPLVPELGG  120
EEQEPVVVDN DETEEQMLCR VPVFDPFDVR TDDLDSFSDM DFSEFAADVE GRLDKEDDEI  180
SAYVGGGEGV QGVLAKVKGE EEIDGDVACY LESVFDMISD DAFHWNNIES VVSDAREEKG  240
CVVPCDGGVS EQGGIKRDIF LRLNYDEVIT AWSSQGSSPW TTSNPPKFNS DYDFSLGLSG  300
VDGEGRSLRG HLDGGREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRTC  360
FVGANAFPAY H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326342RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G041100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0689000.0HM068900.1 Glycine max CONSTANS-like zinc finger protein (COL19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304589.10.0zinc finger protein CONSTANS-LIKE 16-like
RefseqXP_028242819.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD02e-82COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLI1KQ520.0I1KQ52_SOYBN; Uncharacterized protein
STRINGGLYMA08G04570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.12e-65B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]