PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G037400.1.p
Common NameGLYMA_08G037400, LOC100777327
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 552aa    MW: 59128.6 Da    PI: 7.5508
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G037400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR421.8e-1393132242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Glyma.08G037400.1.p  93 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCCNNVEN 132
                          89**************************.********9875 PP
2TCR512.8e-16177216140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.08G037400.1.p 177 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 216
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.6E-1592132IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.6993217IPR005172CRC domain
PfamPF036384.0E-1094129IPR005172CRC domain
SMARTSM011148.4E-20177218IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12180215IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MGEGEAEGSD GAPKNVVAND VVANALLPFD VPAKKLARQL DFTGFGGMST TPQPQPPVVL  60
PLRPSTSVRV GKPESPKSRP RPGFEIKEAT PKKQKQCNCK HSKCLKLYCE CFASGIYCDG  120
CNCVNCCNNV ENEAARREAV EATLERNPNA FRPKIASSPH RTRDIREDAG EILILGKHNK  180
GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE RQALFHGDQN NNLVYIQQAA  240
NAAITGAIGS SGYSSPPISK KRKGQELLFG PTVKDPSVGR QGQQANNVRV PAPSSSLSPI  300
PGARVGPATL GPSKLMYRSL LADIIQPQHL KELCSVLVLV SGQAAKTFTD QKNLMDKHAE  360
DQTETSRASS TQEQLPSQKE ANVDKAMADD DCSSANQTDN ISLDNSCSDG ADAPKGRPMS  420
PGTLALMCDE QDTMFMTAAS PVGSRAHACN TSLQPPYGQV MTEVYAEQER IVLTKFRDFL  480
NRVITMGEIN ETKCSSLARS ELESQKGPNM NCSGNDSTET AHQQAATNNN INGVAKAAAG  540
NSILFPGSGS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-31852262132Protein lin-54 homolog
5fd3_B5e-31852262132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.609200.0cotyledon| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G037400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-178AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530500.10.0protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_028242780.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445J9G00.0A0A445J9G0_GLYSO; Protein tesmin/TSO1-like CXC 5
TrEMBLK7L4S40.0K7L4S4_SOYBN; Uncharacterized protein
STRINGGLYMA08G04180.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-164Tesmin/TSO1-like CXC domain-containing protein