PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G034100.1.p
Common NameGLYMA_08G034100, LOC100803542
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18239.8 Da    PI: 6.0114
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G034100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14.1e-221257449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +++  +qvtfskRr+g++KKA+ELS+LC+aevav++fs+ ++ y +
  Glyma.08G034100.1.p 12 KDSNTKQVTFSKRRTGLFKKANELSILCGAEVAVVVFSPGNNPYSF 57
                         678889********************************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-26174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.936161IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-31160IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-19323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVRRKIEITE LKDSNTKQVT FSKRRTGLFK KANELSILCG AEVAVVVFSP GNNPYSFGHP  60
SVDVVADKFL KQEPKSNDVQ GTSTEVADMD RLNQQLSDVQ NEILEEQKKA AELNERMKQK  120
GVTQLFQPKE LQGSNLEIQK MKDCYDAIEV SEYMLLLAKN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-15179183MEF2 CHIMERA
6bz1_B2e-15179183MEF2 CHIMERA
6bz1_C2e-15179183MEF2 CHIMERA
6bz1_D2e-15179183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G034100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-77AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634030.11e-116agamous-like MADS-box protein AGL29
TrEMBLI1KPX31e-115I1KPX3_SOYBN; Uncharacterized protein
STRINGGLYMA08G03820.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.11e-32AGAMOUS-like 91