PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G009100.1.p

Common Name

GLYMA_08G009100, LOC100777509

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 340aa MW: 38184.8 Da PI: 7.5706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G009100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.1e-10	168	215	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Glyma.08G009100.1.p 168 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALVLDEIINYVQSLQ 215 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.40E-11	162	219	No hit	No description
SuperFamily	SSF47459	3.66E-17	162	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.961	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	164	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-7	168	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MAAFSSQYYH PFLVDSACLS ITPPIINTSS TLPPSPHYLL NNNNIHIQET SYSVTNNQET 60 SCVDNQSSKV TTISDTEYSV VNKNHSPETS MVVDKLEKGE QFTQKVVTPM EKEKKRRARN 120 GSSKESTEGG NEKQKKPKEV KKDEKKGAED PPTGYIHVRA RRGQATDSHS LAERVRREKI 180 SERMKTLQRL VPGCDKVTGK ALVLDEIINY VQSLQNQVEF LSMKLALVNP MFYDLAIDLD 240 TLMVRPDQKL NYNIASPSPC LAQFRPNQAI AFADTTTTNS FPTANNGDYL LDYSSSLFLQ 300 GPRSNLFFEY NGGQFWDVED QRQKFLHPYG FGNNSGSFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G009100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094901	0.0	BT094901.1 Soybean clone JCVI-FLGm-14F14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003532431.2	0.0	transcription factor bHLH137
Refseq	XP_028247174.1	0.0	transcription factor bHLH137-like
Swissprot	Q93W88	5e-54	BH137_ARATH; Transcription factor bHLH137
TrEMBL	I1KP38	0.0	I1KP38_SOYBN; Uncharacterized protein
STRING	GLYMA08G01210.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G009100.1.p
Entrez Gene	100777509

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]