PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G008100.2.p
Common NameGLYMA_08G008100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 651aa    MW: 72261 Da    PI: 7.3006
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G008100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.8e-1110545399
                         EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         +++++r++l++GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  Glyma.08G008100.2.p 10 SGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRVGVRRA 54
                         67899**************************..449999*****996 PP
2Auxin_resp117.31.3e-3879161183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha+ t+++F+v+Y+Pr+s++eF+v++++++++lk+++++GmRfkm+fe+e+++e+r++Gt+vg++d+d+ rWp+SkWrsLk
  Glyma.08G008100.2.p  79 AWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLK 161
                          79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.897155IPR003340B3 DNA binding domain
CDDcd100174.54E-7553No hitNo description
PfamPF023625.1E-8854IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-15868IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-101182IPR015300DNA-binding pseudobarrel domain
PfamPF065072.7E-3679161IPR010525Auxin response factor
PfamPF023094.5E-12513614IPR033389AUX/IAA domain
PROSITE profilePS5174523.819526608IPR000270PB1 domain
SuperFamilySSF542779.32E-11528603No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MTDGRVELIS GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN  60
VPSSVISSHS MHLGVLATAW HAILTGTMFT VYYKPRTSPA EFIVPYDQYM ESLKNNYTIG  120
MRFKMRFEGE EAPEQRFTGT IVGIEDADTK RWPKSKWRSL KVRWDETSNI PRPERVSQWK  180
IEPALAPLAL NPLPMPRPKR PRSNVVPSSP DSSVLTREAS KVSVDPLPTS GFQRVLQGQE  240
LSTLRGNFAE SNESDTAEKS GVWPPATDDE KIDVSTSRRY GSDSWMSMGR HEPTYPDLLS  300
GFGAHGDHSS HPSFVDQNGP VANLSRKHLL DREGKHNVLS PWPGVPSSLS LNLLDSNLKG  360
SAQGGDTAYQ VRGNLRYSSA FGEYPVLHGH KVEHSHRSFL MPPPPSTQYE SPRSRELLSK  420
PISGKPCEVS KLKDSDCKLF GISLLSSRPI ASEPSLSQRN VTSESVGHMH TASHHQRAIE  480
NDQKSEHSRG SKPADGLLID DHEKVLQTSQ PHLKDVQAKS HSGSARSCTK VHKKGIALGR  540
SVDLTKFSDY GELITELDQL FEFGGELTSP QKDWLIVYTD NEGDMMLVGD DPWQEFVAMV  600
RKIYIYPKEE IQKMSPGTLS SKNEENQSAS EGAADAQEIE CQLNHSSSDT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A3e-838183179354Auxin response factor 1
4ldx_B3e-838183179354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.25630.0cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression increases during floral development. Expressed during ovary development with the highest expression on the third day after the flower fully opened. {ECO:0000269|PubMed:21735233}.
UniprotTISSUE SPECIFICITY: Expressed in root, leaf and stem (PubMed:26716451, PubMed:21735233). Also expressed in flower and fruit (PubMed:26716451). Expressed in flower buds about three days before opening including stamen, petal and sepal with the highest in ovary (PubMed:21735233). {ECO:0000269|PubMed:21735233, ECO:0000269|PubMed:26716451}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G008100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354310.0AC235431.1 Glycine max strain Williams 82 clone GM_WBb0144O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532359.10.0auxin response factor 2B
RefseqXP_028242517.10.0auxin response factor 2B-like
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLI1KP300.0I1KP30_SOYBN; Auxin response factor
STRINGGLYMA08G01100.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]