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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.07G271100.1.p |
Common Name | GLYMA_07G271100, LOC100812779 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 401aa MW: 45500.1 Da PI: 7.2416 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.07G271100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 160.3 | 7.5e-50 | 43 | 168 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+
Glyma.07G271100.1.p 43 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 131
79***************************.89***************8778899************************************ PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++ + +glkktLvfy+g+apkg +t+W+m+eyrl
Glyma.07G271100.1.p 132 IRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 168
***********************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MAIAAANSSP TMSLSHSQSQ EDATTNDNKP VVVDDDHEHD MVMPGFRFHP TEEELVEFYL 60 RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS 120 GYWKATGADR MIRTENFRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERYQKAE 180 ISLCRVYKRA GVEDHPSLPR CLPTRPSSSS RASSDHINNN KSTKHNEMVQ HHNINMGFMG 240 QSKPPTTEHI VDKINESEAS SDVNTTLGLS KYNAYRAATM ALPVVPMDEE ALMMMQQSKQ 300 AAAAAAHVPT IFSAGPSSSN NSGVVNMDDL NRLMSYQHQY YNVQSQSHPN QFSTLLMQPS 360 PIVSLSSLPN PLPPTFSDRL WDWNPIPESP SQEYSNISFK *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-55 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 44 | 189 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 44 | 189 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |