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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Glyma.07G251100.1.p | ||||||||
| Common Name | GLYMA_07G251100, LOC102670256 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | bHLH | ||||||||
| Protein Properties | Length: 202aa MW: 22212.8 Da PI: 9.9008 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 22.9 | 1.6e-07 | 55 | 98 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+Er RR+++ + f +L++ +P + + + i ++++YIk+L+
Glyma.07G251100.1.p 55 VERERRSKMTQMFTQLQTTVPGvL-----PQATREVIINETIKYIKELE 98
7*********************88.....678899***********996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 10.448 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.3E-5 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.83E-10 | 54 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 55 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.39E-4 | 55 | 94 | No hit | No description |
| Pfam | PF00010 | 4.0E-5 | 55 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 202 aa Download sequence Send to blast |
MQGHTETNSI MAPLSQIPPS SSSLHLSTDA ETGNTTTPRK RVKKMDHTNC ESLNVERERR 60 SKMTQMFTQL QTTVPGVLPQ ATREVIINET IKYIKELEKK KQKLEELKES MKGVEGSILL 120 ACGNNMNCSV TVTVSANVAF FGIQSLPRPG LVTVIMKVFC KHRAEVLAAN VSVNNGKFIL 180 AITATVQNVV VENIKREIMS L* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.07G251100.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006584040.1 | 1e-146 | uncharacterized protein LOC102670256 | ||||
| TrEMBL | K7L3R7 | 1e-145 | K7L3R7_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA07G38085.1 | 1e-146 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF14330 | 13 | 14 |
| Representative plant | OGRP13847 | 3 | 4 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Glyma.07G251100.1.p |
| Entrez Gene | 102670256 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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