PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G249000.1.p
Common NameGLYMA_07G249000, LOC100786046
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 122aa    MW: 13738.5 Da    PI: 6.6304
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G249000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.59.5e-5418113297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          reqdr+lPianv+rimk++lP nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal++lGf+dy+epl+ yl++yr
  Glyma.07G249000.1.p  18 REQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLQRYR 107
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          ele ++
  Glyma.07G249000.1.p 108 ELEVDR 113
                          ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-5111115IPR009072Histone-fold
SuperFamilySSF471131.71E-3820117IPR009072Histone-fold
PfamPF008082.3E-272387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-195169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-197088No hitNo description
PRINTSPR006151.8E-1989107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MVDNVGGSSS NAENSGIREQ DRLLPIANVG RIMKQILPPN AKISKESKET MQECVSEFIS  60
FVTSEASEKC RKERRKTVNG DDICWALGSL GFDDYAEPLR RYLQRYRELE VDRGNSPPKR  120
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4517108192Transcription factor HapC (Eurofung)
4g92_B3e-4517108192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G249000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529577.13e-85nuclear transcription factor Y subunit B-5
RefseqXP_028241700.13e-85nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A445K1B57e-84A0A445K1B5_GLYSO; Nuclear transcription factor Y subunit B-5
TrEMBLK7L3Q07e-84K7L3Q0_SOYBN; Uncharacterized protein
STRINGGLYMA07G37840.21e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-49nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]