PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G230400.2.p | ||||||||
Common Name | GLYMA_07G230400, LOC100816514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 331aa MW: 35295.6 Da PI: 7.0258 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 211.4 | 2.2e-65 | 117 | 277 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 +sgt +CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpa++rrerq ++ aa++++ +++ +k++r s+++s +s+++ Glyma.07G230400.2.p 117 GSGTNTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPASRRRERQLMTVAAARSSG---DTSGAKKPRLVASQTTSHTSTSNN 203 57899**********************************************988887755554...567778888887777777777788 PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++++t s lP +v+++avf+cvrv++vdd ge+e+aYq++v+igGhvfkG+LydqG+e+ Glyma.07G230400.2.p 204 TNTTPPRSFDTGSshqdvgfkesLPCQVRAPAVFKCVRVTAVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 277 88888899988888899999999*********************899*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.2E-60 | 120 | 276 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.6E-27 | 122 | 164 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.5E-29 | 227 | 275 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MWPGASRSFN YNMAPHHDIF VVAPASSFHH HHDHNDAVLS DPNNGSNNSN NNPGTALGVN 60 VFPLLTATPC LESEGIMGNI SHHRNRIQLW EDHESSPPQQ QQGHVERDTC GDGGLGGSGT 120 NTCQDCGNQA KKDCSHRRCR TCCKSRGFDC ATHVKSTWVP ASRRRERQLM TVAAARSSGD 180 TSGAKKPRLV ASQTTSHTST SNNTNTTPPR SFDTGSSHQD VGFKESLPCQ VRAPAVFKCV 240 RVTAVDDGGE DEYAYQAVVK IGGHVFKGFL YDQGVEDKEG YPNLSELHLG GGNGVSSSSP 300 MVDPSHDVYA ASGGGLLLGG SSNYGNHPIN * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.42225 | 0.0 | meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G230400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025984918.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_028241482.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like, partial | ||||
Swissprot | Q94CK9 | 5e-84 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A445K0K6 | 0.0 | A0A445K0K6_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A | ||||
TrEMBL | K7L3E3 | 0.0 | K7L3E3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G35780.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 9e-79 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G230400.2.p |
Entrez Gene | 100816514 |
Publications ? help Back to Top | |||
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