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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.07G230400.1.p |
| Common Name | GLYMA_07G230400, LOC100816514 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
SRS |
| Protein Properties |
Length: 331aa MW: 35295.6 Da PI: 7.0258 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.07G230400.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 211.4 | 2.2e-65 | 117 | 277 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91
+sgt +CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpa++rrerq ++ aa++++ +++ +k++r s+++s +s+++
Glyma.07G230400.1.p 117 GSGTNTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPASRRRERQLMTVAAARSSG---DTSGAKKPRLVASQTTSHTSTSNN 203
57899**********************************************988887755554...567778888887777777777788 PP
DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
++++++++++t s lP +v+++avf+cvrv++vdd ge+e+aYq++v+igGhvfkG+LydqG+e+
Glyma.07G230400.1.p 204 TNTTPPRSFDTGSshqdvgfkesLPCQVRAPAVFKCVRVTAVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 277
88888899988888899999999*********************899*************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MWPGASRSFN YNMAPHHDIF VVAPASSFHH HHDHNDAVLS DPNNGSNNSN NNPGTALGVN 60
VFPLLTATPC LESEGIMGNI SHHRNRIQLW EDHESSPPQQ QQGHVERDTC GDGGLGGSGT 120
NTCQDCGNQA KKDCSHRRCR TCCKSRGFDC ATHVKSTWVP ASRRRERQLM TVAAARSSGD 180
TSGAKKPRLV ASQTTSHTST SNNTNTTPPR SFDTGSSHQD VGFKESLPCQ VRAPAVFKCV 240
RVTAVDDGGE DEYAYQAVVK IGGHVFKGFL YDQGVEDKEG YPNLSELHLG GGNGVSSSSP 300
MVDPSHDVYA ASGGGLLLGG SSNYGNHPIN *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.4 | 9e-79 | Lateral root primordium (LRP) protein-related |
