PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G230400.1.p

Common Name

GLYMA_07G230400, LOC100816514

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 331aa MW: 35295.6 Da PI: 7.0258

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G230400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.4	2.2e-65	117	277	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 +sgt +CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpa++rrerq ++ aa++++ +++ +k++r s+++s +s+++ Glyma.07G230400.1.p 117 GSGTNTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPASRRRERQLMTVAAARSSG---DTSGAKKPRLVASQTTSHTSTSNN 203 57899********************************************988887755554...567778888887777777777788 PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++++t s lP +v+++avf+cvrv++vdd ge+e+aYq++v+igGhvfkG+LydqG+e+ Glyma.07G230400.1.p 204 TNTTPPRSFDTGSshqdvgfkesLPCQVRAPAVFKCVRVTAVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 277 88888899988888899999999*****************899***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-60	120	276	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.6E-27	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-29	227	275	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MWPGASRSFN YNMAPHHDIF VVAPASSFHH HHDHNDAVLS DPNNGSNNSN NNPGTALGVN 60 VFPLLTATPC LESEGIMGNI SHHRNRIQLW EDHESSPPQQ QQGHVERDTC GDGGLGGSGT 120 NTCQDCGNQA KKDCSHRRCR TCCKSRGFDC ATHVKSTWVP ASRRRERQLM TVAAARSSGD 180 TSGAKKPRLV ASQTTSHTST SNNTNTTPPR SFDTGSSHQD VGFKESLPCQ VRAPAVFKCV 240 RVTAVDDGGE DEYAYQAVVK IGGHVFKGFL YDQGVEDKEG YPNLSELHLG GGNGVSSSSP 300 MVDPSHDVYA ASGGGLLLGG SSNYGNHPIN *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.42225	0.0	meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G230400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025984918.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_028241482.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like, partial
Swissprot	Q94CK9	5e-84	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A445K0K6	0.0	A0A445K0K6_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A
TrEMBL	K7L3E3	0.0	K7L3E3_SOYBN; Uncharacterized protein
STRING	GLYMA07G35780.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	9e-79	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Glyma.07G230400.1.p
Entrez Gene	100816514

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]