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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G230200.1.p | ||||||||
Common Name | GLYMA_07G230200, LOC100814924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 359aa MW: 39158.2 Da PI: 8.0767 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.5 | 1.6e-33 | 62 | 120 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 v YkeClkNhAas+Ggha+DGCgEfm s+++ +++++lkCaACgCHRnFHRre++e+ Glyma.07G230200.1.p 62 VVSYKECLKNHAASIGGHALDGCGEFMLSSSTVpSDPRSLKCAACGCHRNFHRREPQEN 120 689**************************88889*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-28 | 63 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 63 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.557 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.0E-30 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 221 | 292 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.93E-18 | 221 | 291 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.4E-26 | 230 | 287 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MDLTSISTHN TNTTQTLDAA NTTTKTTPPT PIPTTTPKSL SFANGTLKRH PTTTVAQPPS 60 MVVSYKECLK NHAASIGGHA LDGCGEFMLS SSTVPSDPRS LKCAACGCHR NFHRREPQEN 120 NLNNNLKNNN PTFLNCIYTL SAPAPLSHRA MSQSTSPSLS SSPSHSQSPI SSPSPPPLSH 180 VPPYHASAPH MLLALGSAYS AEPSDEHHHH QQQQHKSFNL SMMRSENPTK KRYRTKFSKE 240 QKEKMHSFSE KLGWRMQKGD DGLVQEFCND IGVSRGVFKV WMHNNKNTFR KKSEDGNGNA 300 NAPQSNDDDN ANGGGGGFDS DINNPYNPNS NNNDIHMKEV DDACVNNVVH VSLNEMSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-22 | 229 | 288 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22587 | 0.0 | cotyledon| hypocotyl| leaf| root| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G230200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528585.2 | 0.0 | zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A0R0JCS9 | 0.0 | A0A0R0JCS9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G35760.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-52 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G230200.1.p |
Entrez Gene | 100814924 |