PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 353aa MW: 40154.1 Da PI: 7.3614

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G228900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.1	3.1e-20	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA E+S+LCd+++ +++f+++gk Glyma.07G228900.1.p 9 KRLENTNGRQATYAKRKNGIMKKAAEISILCDIDIILLMFAPNGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.5E-26	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.226	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.05E-22	2	54	No hit	No description
SuperFamily	SSF55455	2.09E-23	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.3E-17	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-16	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	6.806	107	203	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAEISILCD IDIILLMFAP NGKPSLCRGR 60 HSNFEEVIAK FGQLTPQERA KRKLETLEAL KKTFKKLDHD VNVQEFMGTS SQTIEDLSNQ 120 ARLLQTQISE THKRLSHWTE FDKISNVDQL GQMENSLRES LNQIRTRKEN IKKQQQLMSL 180 QCNNQFNEMN IPFRMSVEQQ LQPLSWIAND DNHNIVLPED SNMFLHKDVE GSTSSSFGSH 240 VSYLGSSIKN DMSNSAQENG VLSDMSNTAP MRLQLNGHFP YLPYNFNLPN NLKFQPTAEI 300 NPYENPVDYH VNGGFEAPRS GYDSNNHHDW ASTSGPCGVT MFDEQLYAQQ PN*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAEISILCD IDIILLMFAP NGKPSLCRGR  60
HSNFEEVIAK FGQLTPQERA KRKLETLEAL KKTFKKLDHD VNVQEFMGTS SQTIEDLSNQ  120
ARLLQTQISE THKRLSHWTE FDKISNVDQL GQMENSLRES LNQIRTRKEN IKKQQQLMSL  180
QCNNQFNEMN IPFRMSVEQQ LQPLSWIAND DNHNIVLPED SNMFLHKDVE GSTSSSFGSH  240
VSYLGSSIKN DMSNSAQENG VLSDMSNTAP MRLQLNGHFP YLPYNFNLPN NLKFQPTAEI  300
NPYENPVDYH VNGGFEAPRS GYDSNNHHDW ASTSGPCGVT MFDEQLYAQQ PN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G228900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528580.1	0.0	agamous-like MADS-box protein AGL30
Refseq	XP_028242338.1	0.0	agamous-like MADS-box protein AGL30
Swissprot	Q1PFA4	1e-106	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A0R0JCU0	0.0	A0A0R0JCU0_SOYBN; Uncharacterized protein
TrEMBL	A0A445K0F5	0.0	A0A445K0F5_GLYSO; Agamous-like MADS-box protein AGL30
STRING	GLYMA07G35610.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70
Representative plant	OGRP5946	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	2e-87	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Glyma.07G228900.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]