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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Glyma.07G227000.1.p | ||||||||
| Common Name | GLYMA_07G227000 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 119aa MW: 13545.8 Da PI: 4.3083 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 24.8 | 7.3e-08 | 61 | 98 | 2 | 40 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
fY+eYA++ GF vrk +++ g+i k +f C+ke +
Glyma.07G227000.1.p 61 FYREYARSHGFVVRKYDVSQN-VAGNINKCQFICNKEAN 98
9***************99998.7888**********986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 4.6E-5 | 61 | 98 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 119 aa Download sequence Send to blast |
MSHNVDVNSD ENDNGDKGDV GIENVEDRED ATNEEDRRIV GLVSDEINVL DFGSEEHAFI 60 FYREYARSHG FVVRKYDVSQ NVAGNINKCQ FICNKEANRI FNVFGDVFAF DTIYKRLN* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.07G227000.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0R0J6X4 | 2e-78 | A0A0R0J6X4_SOYBN; Uncharacterized protein | ||||
| TrEMBL | A0A445K0B8 | 2e-78 | A0A445K0B8_GLYSO; Uncharacterized protein | ||||
| STRING | GLYMA07G35355.1 | 5e-62 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3290 | 7 | 52 |
| Representative plant | OGRP11434 | 2 | 5 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Glyma.07G227000.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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