PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G224100.3.p
Common NameGLYMA_07G224100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 175aa    MW: 19584.7 Da    PI: 8.6782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G224100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-13841334292
                          TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           g+sW++ + y +++++ +  +GWk+Fv +n L++gD ++F+l+++s+++ 
  Glyma.07G224100.3.p  84 GGKSWDMVY-YGQSKQKAFGVTGWKKFVIDNCLRVGDACIFELMESSDKKV 133
                          59*******.777777788889********************997766544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1443136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1244141IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004946143IPR003340B3 DNA binding domain
CDDcd100171.52E-1184141No hitNo description
PfamPF023621.4E-1184134IPR003340B3 DNA binding domain
PROSITE profilePS5086310.84285143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MFSRRSSGRV ASGRVALENG VPLPLLPDPK ANLQWDEVKP LSGKPYWHSV LSPTNLQPRY  60
NLMPGMNLRS KLPSNEVPTI LIYGGKSWDM VYYGQSKQKA FGVTGWKKFV IDNCLRVGDA  120
CIFELMESSD KKVILEVQIL RGDIPSEWLG NEMIIGQENE MIIGHSRENP IVLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G224100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529446.11e-123B3 domain-containing protein Os04g0386900 isoform X1
RefseqXP_006583943.11e-123B3 domain-containing protein Os04g0386900 isoform X1
RefseqXP_028241414.11e-123B3 domain-containing protein Os04g0386900-like isoform X2
RefseqXP_028241415.11e-123B3 domain-containing protein Os04g0386900-like isoform X2
RefseqXP_028241416.11e-123B3 domain-containing protein Os04g0386900-like isoform X2
RefseqXP_028241417.11e-123B3 domain-containing protein Os04g0386900-like isoform X2
TrEMBLA0A0R0JHA41e-124A0A0R0JHA4_SOYBN; Uncharacterized protein
STRINGGLYMA07G35040.31e-122(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-08B3 family protein