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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G224100.2.p | ||||||||
Common Name | GLYMA_07G224100, LOC100804948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16440 Da PI: 4.7717 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.6 | 5.2e-14 | 48 | 97 | 42 | 92 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 g+sW++ + y +++++ + +GWk+Fv +n L++gD ++F+l+++s+++ Glyma.07G224100.2.p 48 GGKSWDMVY-YGQSKQKAFGVTGWKKFVIDNCLRVGDACIFELMESSDKKV 97 59*******.777777788889********************997766544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0044 | 4 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-13 | 39 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-11 | 47 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-11 | 48 | 105 | No hit | No description |
Pfam | PF02362 | 6.9E-12 | 48 | 98 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.842 | 49 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MHKFLMSLES GHSSCPQCFL ADQVEEMPGM NLRSKLPSNE VPTILIYGGK SWDMVYYGQS 60 KQKAFGVTGW KKFVIDNCLR VGDACIFELM ESSDKKVILE VQILRGDIPS EWLGNEMIIG 120 QGNEMIIGQE NEMIIGHSRE NPIVLN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G224100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006583945.1 | 1e-105 | B3 domain-containing protein Os06g0112300 isoform X3 | ||||
TrEMBL | K7L3A4 | 1e-103 | K7L3A4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G35040.3 | 2e-83 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G224100.2.p |
Entrez Gene | 100804948 |