PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G201200.1.p
Common NameGLYMA_07G201200, LOC100818817
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 1783aa    MW: 199385 Da    PI: 5.262
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G201200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.71e-1847102257
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           kR+  t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk
  Glyma.07G201200.1.p  47 PKRQMKTPFQLETLEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKK 102
                          69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-1926102IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1733102IPR009057Homeodomain-like
PROSITE profilePS5007116.81143103IPR001356Homeobox domain
SMARTSM003891.2E-1845107IPR001356Homeobox domain
PfamPF000462.2E-1647102IPR001356Homeobox domain
CDDcd000869.96E-1548102No hitNo description
PROSITE profilePS5082716.1557616IPR018501DDT domain
SMARTSM005714.3E-20557616IPR018501DDT domain
PfamPF027911.9E-16559613IPR018501DDT domain
PfamPF050661.7E-15739807IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156125.9E-8945987IPR028942WHIM1 domain
PfamPF156131.5E-1211251197IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1783 aa     Download sequence    Send to blast
MEGEGCSEGE NNRKRGGSDD DSNENNNNNN NGSSGKIVNS NEGQSKPKRQ MKTPFQLETL  60
EKAYAVDNYP SETMRVELSE KLGLSDRQLQ MWFCHRRLKD KKDLPSKKPP RKVLAEPLPD  120
SPRDDPRLSL ELANEYGSGS GSGSSPYARV EPLNVVPRCV PGYYESPQAK LELRAIACVE  180
AQLGEPLRDD GPILGLEFDP LPPDAFGAPI AAVTEQQKLP SFAYDSKIYE RHDARTNKAL  240
ARTFRDNQFL PNKSGIRSDA SGQFSQSHLH DPIEGFVRNP PFAHGNEHLP RIHATKGHSS  300
RVRLLSQQDK QLIPYQSPSR DDDAAPQREL YPNIANAGKN SHSTGHQIVG PENLHALPSV  360
QVLHNNATWI EKKRKSDDAH DVEAHEMKIR KELEKQDNLR RKSEERTRKE MERQDRERKK  420
EEERLMRERQ REEERARREQ KREMERREKF LLKENLKAEK TRQREELRKE REAERRKAAL  480
EKATARRMAK ESMELIEDEQ LEMMELAASS TGFSSIVHLD FDTLQHIESF RDSLCVFPPK  540
SVKLRKPFAI KPWINSENNV GNLLMVWRFL INFADVLELW SFTLDEFVQA FHDYDSRLLG  600
EIHVSLLKVI IKDIEDVART PSTGLGANQN GAANTGGGHP EIVAGAYAWG FDIRNWHKHL  660
NLLTWPEIFR QLALSAGYGP QLKKRSISWS YANNKDEGRS CEDIISTLRN GSAAENAVAK  720
MHERGLLAPR RSRHRLTPGT VKFAAFHVLS LEGEKGLNVL ELAEKIQKSG LRDLTTSKTP  780
EASISVALTR DAKLFERIAP STYCVREAFR KDPADAESIL SEARKKIQIF ENGFLAGEDA  840
DDVERGESES DEIDEDPEVD DLVNPTSANK TSEQCDDFSS NGKENLGHNV ELQGEFDKNL  900
PCFPESGSKN ADAPIAVTGQ SGACEDLDVG NLGEDNMEID ERKPGESWVQ GLAEEEYSDL  960
SVEERLNALA VLVGVANEGN SIRVVLEDRL EAANALKKQM WAEAQVDKVR LKDDTFSKSD  1020
FPSINGNKVE IQYSCPVTEG KQSPLLGINI GNNINNSVPS PSIAENHKAA SGSQSLSVEK  1080
HSSVQDLCTG PDNPQAQSFV QYSKRSRSQW KSYISHMAEE MYVYRSLPLG QDRRRNRYWQ  1140
FVASASSNDP GSGRIFVEYL DGNWRLIDTE EAFDVLLNSL DSRGIRESHL RLMLQKVEIS  1200
FKENVRLNTQ CSKIGSIGET CVKNEADETD SSPDRHTGSD SPSSTLCGLN SDTSETSSSF  1260
KIELGKSESD KKSALRRYQD FQKWMWKECY NSPILCAMKY GKKRCKPQVV ICDICLNPYF  1320
FEDSHCSGCH QTFSSNSGFS FSKHAFQCGD KLSKNICILD SSLPLRTRLL KAMLAFIEVS  1380
VPPEAFQSNW TEDIRRHWSV KLSKSSSVEE LLQILTLLER ALKRDFLSST FSTTGEQLGL  1440
NSMSKSAAQT STDPESVAVL PWVPLTTSAA SLRLLEFDAS IVYVPHEKPE PCEEKEDRVY  1500
MKLPSRYNPS KSSKAAEAAD LDHDEFMKVK SASVKIVQSN NKRGRGSRDK GRGKKLSKTK  1560
QNTGHRGAKV AGNASQRIKQ QEVGSQGQAG GRGRRTVRKR RVGKKAVEDL LLGHRGATHS  1620
SSIGRESLRS MDEDWDDEKA SPVTPIHMGA ANNSNSIEEA ESDDNVQAME SDDNVQAMES  1680
DDNEQAAESD DNGQAVEYDQ GNWEIGFNGA PSRWSRDLVG MSDDDVEASE DDDDNDNVIG  1740
IENNGEEDSE ADAMSEEGSD GTANRIVNEE SSESDVSEDS SD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRLKDKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G201200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583834.20.0homeobox-DDT domain protein RLT1 isoform X1
TrEMBLA0A0R0JEE70.0A0A0R0JEE7_SOYBN; Uncharacterized protein
STRINGGLYMA07G32180.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator