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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G187900.1.p | ||||||||
Common Name | GLYMA_07G187900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 23334.2 Da PI: 8.779 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 7e-10 | 35 | 88 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as.kapskK.lsKaeiLekAveYIksLq 55 + e+ErrRR+++ +++ Lr+l+P + ++ ++Ka+i+e A+ YI q Glyma.07G187900.1.p 35 NLEVERRRREKLSTRILLLRSLVPIiTMqQPLELHlMNKATIVEDAITYIETQQ 88 6699*********************887544444579*************8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.195 | 30 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 32 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.96E-8 | 32 | 92 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-12 | 32 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 34 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-7 | 36 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSLDEFSFNA ENGSNRERMR RKNYDYDTQV FKSKNLEVER RRREKLSTRI LLLRSLVPII 60 TMQQPLELHL MNKATIVEDA ITYIETQQNI VQSLSYELHE MEATSEEIKP KKEEIDAAEE 120 MNKLGIVQAT KIDGNKLWVK MIIEKKRGRF KKLMEAMDNI GIELIDTNVT TLKKAYLVTT 180 FMQVTLGKIG IFVMDIVWGN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 43 | ERRRRE |
2 | 39 | 44 | RRRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in floral meristem and early anther primordia. Later detected in archesporial cells. From stage 4 to early stage 5, weakly expressed in precursors of the middle layer, tapetum and meiocytes. Strongly expressed in the tapetum from late anther stage 5 to early stage 6, and at a lower level in meiocytes. {ECO:0000269|PubMed:16831835}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in anthers, and, to a lower extent, in young inflorescences undergoing meiosis and siliques. {ECO:0000269|PubMed:16831835}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G187900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC185959 | 2e-46 | AC185959.13 Glycine max cultivar Williams 82 clone gmw1-58k3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348379.1 | 3e-76 | transcription factor DYT1-like | ||||
Swissprot | O81900 | 3e-36 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A0R0J517 | 1e-144 | A0A0R0J517_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JYK8 | 1e-144 | A0A445JYK8_GLYSO; Transcription factor DYT1 | ||||
STRING | XP_007148286.1 | 2e-70 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 | Representative plant | OGRP10309 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G187900.1.p |