PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 255aa MW: 27927 Da PI: 6.0736

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G174000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Glyma.07G174000.1.p 94 FSCNYCQRKFFSSQALGGHQNAH 116 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.94E-6	92	122	No hit	No description
PROSITE profile	PS50157	11.344	94	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MMTPNLNLEP EGGLKVLSQV GFDKSIQETS HDLTKDSTAT SSCLTKADPD PGSVSLDLSL 60 NFNPNDEELK GTSDTNCEVG PETHASASAI PRVFSCNYCQ RKFFSSQALG GHQNAHKRER 120 TMAKRAMRMG MFAERYTSLA SLPLHGSAFR SLGLEAHAAM HQGHVHHSMR APDMSAAAKF 180 GKDYFRTPIF VEDDDVGLFW PGSFRQIDER GYVNLRHGFE ELGECSSEDF LSSHAASSSF 240 ASAETAFRFG EVQY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.2134	0.0	root\| somatic embryo\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G174000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583751.1	1e-165	zinc finger protein 7
Refseq	XP_006583752.1	1e-165	zinc finger protein 7
Refseq	XP_014633576.1	1e-165	zinc finger protein 7
Refseq	XP_014633577.1	1e-165	zinc finger protein 7
Refseq	XP_028240785.1	1e-165	zinc finger protein 7-like
Refseq	XP_028240786.1	1e-165	zinc finger protein 7-like
Refseq	XP_028240787.1	1e-165	zinc finger protein 7-like
Swissprot	Q39263	4e-37	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A0R0J4L4	0.0	A0A0R0J4L4_SOYBN; Uncharacterized protein
STRING	GLYMA07G27820.1	1e-164	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	6e-39	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Glyma.07G174000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]