PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G168800.1.p
Common NameGLYMA_07G168800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 680aa    MW: 79318 Da    PI: 5.2984
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G168800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.3e-1797185289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          fY+ YAk + Fs+rks+  ++ + +e+ ++tfvCs+ g+r+++ ++ ++++rr+++e+r+gC+  ++v+ +  +g+w+vt  + eHnH l
  Glyma.07G168800.1.p  97 FYCWYAKIIDFSIRKSHIVRN-TCRETLQQTFVCSCAGYRRDKGSTsNTRKRREKKESRCGCEVIFHVHVHFsTGRWYVTCWNFEHNHLL 185
                          9****************9999.66779*************9998876789999******************99***************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1597185IPR004330FAR1 DNA binding domain
PfamPF105518.6E-20232301IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MNENDHEEED DNDVIEVYEN EHEEEDDARL EDEDEVDCEV QNDDYGDYDD FWIPSLLKDE  60
CISFETIVDI RQFDMEKMSV EDVSRLDFAE LELAYVFYCW YAKIIDFSIR KSHIVRNTCR  120
ETLQQTFVCS CAGYRRDKGS TSNTRKRREK KESRCGCEVI FHVHVHFSTG RWYVTCWNFE  180
HNHLLLDLKL SCLLPTHSKM STTDIMQIEN YRKVGIRPLH MYASFANHCG GYDKTIVFAA  240
AIVTDETEET YVWLLEQFLE TMKGKTPCSI ITDGDLAMRN AITRVMAGVF HRLCAWHLLR  300
NALSHVGDKQ VLKWLKKLIL GDFEVVTFEE KWKEMIATFE LEDNSWIGEL YEKRMKWSPA  360
HLREQFQRCL TYFRYRVVVA DYFSTYGNEV LQTNLRSLER SVDQLLTKEM FILFQSYVSR  420
TIKLRVVDCK EMATFSVYTI VKYYSGSVWR VSYFPSTVNF SCCCMRMQSI GLPCDQILVV  480
LVCLNFTKLP SCLVLNRWSK SATENIKDKY ADSAIYWDSQ LMARYVTLVQ VSREVCEAAY  540
YDEDEYEKIL HFLSNEVRRL KSNKNSEPSI DDNDEQQGHN YDDILYPVVV QTKGCGQVGI  600
DESGKRRRIQ KYGQCGGSGH NKRSCTNRPR NANVCVGGSF ISSSEQTNTM CQPTYEYNYQ  660
LIIKNLFGTI CFTIVMLCT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RKRREK
2144151RKRREKKE
3604608KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G168800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351480.0AC235148.1 Glycine max strain Williams 82 clone GM_WBa0082C08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584346.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_028242230.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445JXQ30.0A0A445JXQ3_GLYSO; Protein FAR1-RELATED SEQUENCE 5
TrEMBLK7L2830.0K7L283_SOYBN; Uncharacterized protein
STRINGGLYMA07G25623.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-31FAR1-related sequence 5