 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.07G163700.2.p |
Common Name | GLYMA_07G163700, LOC100806715 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
B3 |
Protein Properties |
Length: 438aa MW: 49582.9 Da PI: 8.8817 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.07G163700.2.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 55.6 | 9.4e-18 | 8 | 96 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
+l+ + +l+s++l++p +f++++g + s+ tl+ ++g +W + l +k ++r+++ +GW++Fv+ + +g f+vF+++g+s+f v+
Glyma.07G163700.2.p 8 KLVLPTTLQSRQLRIPDNFLRKYGTQ--LSTIATLTVPDGSVWPIGL--KKADNRIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSF--IVH 93
445567778888***********966..9999***************..*************************************9..999 PP
EE- CS
B3 96 vfr 98
+f+
Glyma.07G163700.2.p 94 IFN 96
986 PP
|
2 | B3 | 60.3 | 3.3e-19 | 303 | 394 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
vl ps+ + ++++lp +fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l + +e l
Glyma.07G163700.2.p 303 VLRPSYLYRGCIMYLPSTFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVL 387
78899******************876743...59999999********665555..66***********************998899999 PP
EEEEE-S CS
B3 93 vvkvfrk 99
v+vfr
Glyma.07G163700.2.p 388 QVTVFRV 394
9999985 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 438 aa
Download sequence Send
to blast |
MPRPCFDKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWPI GLKKADNRIW 60 FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAMRN HNEGSCFANY 120 HHIFDEMEDV DSLGLSDLSP QYLTPGALQS KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL 180 NRVNWGDGGS AFSLKDANSQ GNQSTRDIGV QFNAVEFKRS TEELKLRYSN SNEEAVNKTA 240 KKKRKSEPYG EEPSGENEEE AEMRYRFYES ASARKRTVTA EERERAINAS KTFEPTNPFC 300 RVVLRPSYLY RGCIMYLPST FAEKNLNGVS GFIKLQLSNG RQWSVRCLYR GGRAKLSQGW 360 FEFTVENNLG EGDVCVFELL RMKEVVLQVT VFRVTEDAGL LNQLPMQQQQ QSPNISHTKL 420 LNPHLQHRIS TTKLIRN*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 9e-72 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-72 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |