PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G158000.2.p
Common NameGLYMA_07G158000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 516aa    MW: 56848.4 Da    PI: 8.8515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G158000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124969323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Glyma.07G158000.2.p 49 CEVCNKGFQREQNLQLHRRGH 69
                         *******************88 PP
2zf-C2H212.10.00061123145123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.07G158000.2.p 123 WKCDKCSKKYAVQSDWKAHSKTC 145
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-74669No hitNo description
Gene3DG3DSA:3.30.160.609.8E-64669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0254769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.974769IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035513088118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5111144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.07E-7118143No hitNo description
SMARTSM00355150123143IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MKRIICCLEL FKIFFFLSWN GNICAYADPD AEVIALSPKT LMATNRFLCE VCNKGFQREQ  60
NLQLHRRGHN LPWKLKQKTN KEPKRKVYLC PEPTCVHHDP SRALGDLTGI KKHYSRKHGE  120
KKWKCDKCSK KYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAHESAR  180
HPSSVNHLGT HHLYGTNHMS LGLGAQLQNH QISATNSILS LGSEPKFEHL ISPNLHHSSS  240
SSFGVQSPQS SSFFMTDPNH AFQDLQSQNQ GHLFSNKQLH GLMQLPDLQG NTNNNSTTSA  300
SSLSASANNT NLFNLSFFPN TNTSGSIIND QFSNISGGNN NQGTATLYST NSPVSNNHVG  360
NSSLSSLFGN SSVQQDNMSP HMSATALLQK AAQMSSTTTT NNELGMRSSI ENEHSSHLRG  420
LLNSLANGNN LGQYHNVVEE PKKMSQNNLG LCFGGSDKLT LDFLGVGGMV RNMNNGGGFS  480
QREQQQQHSM GITMSPLDPK LESAQANQHY GTSTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35119186370Zinc finger protein JACKDAW
5b3h_F4e-35119186370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.134490.0cotyledon| leaf| pod
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G158000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583684.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_006583685.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_028240554.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_028240555.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-126IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLK7L2010.0K7L201_SOYBN; Uncharacterized protein
STRINGGLYMA07G19470.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-98indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]