PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G135800.1.p
Common NameGLYMA_07G135800, N479
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 171aa    MW: 19570.8 Da    PI: 7.0242
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G135800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-054163123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + Fs+   L  H++ H
  Glyma.07G135800.1.p 41 YSCSFCQRGFSNAQALGGHMNIH 63
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-43766IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-63867No hitNo description
SMARTSM003550.00974163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4064168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSYWNFPFTL QRKMEFNSQN PNQSEIRWSS DDQAGPGQVK YSCSFCQRGF SNAQALGGHM  60
NIHRRDRAKL KQSAEEKLLS LDISIKTTGD PNDPSDLEEK FLFRLGAGEE KQARNHKYPF  120
SFPHKDDHHG HVPQIPHLPS FEEKTAELDL ELRLGLHPQE SATLNTRSFF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16371RRDRAKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.333520.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G135800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5766620.0EF576662.1 Glycine max C2H2 zinc finger protein (N479) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235081.11e-126C2H2 zinc finger protein
RefseqXP_028238591.11e-126transcriptional regulator TAC1-like
TrEMBLA0A445JWI21e-124A0A445JWI2_GLYSO; Transcriptional regulator TAC1
TrEMBLA5JUQ41e-124A5JUQ4_SOYBN; C2H2 zinc finger protein
STRINGGLYMA07G16290.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-20C2H2 family protein