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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.07G134800.1.p |
| Common Name | GLYMA_07G134800, LOC100799088 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
ARF |
| Protein Properties |
Length: 665aa MW: 74516.9 Da PI: 6.3935 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.07G134800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 75.6 | 5.5e-24 | 120 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+kvlt sd++++g +++ +k+a+e+ ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF
Glyma.07G134800.1.p 120 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL-- 207
99****************************9555555679************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
+ +++el+v+v+r
Glyma.07G134800.1.p 208 RGNNGELRVGVRR 220
3489999****98 PP
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| 2 | Auxin_resp | 94.6 | 1.5e-31 | 246 | 327 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t++ F v+Y+Pr+ s+F+v+v+k+++a+++k+ vGmRfkm+fe+++s+e +r+sGt+ gv+d++p +W nS+WrsLk
Glyma.07G134800.1.p 246 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNVGMRFKMRFEGDESPEndKRFSGTILGVEDISP-HWVNSNWRSLK 327
789***************6..9********************************9833577**********99.*********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 665 aa
Download sequence Send
to blast |
MSLNCGGCGG EEDELYEQLW KACAGPHVEV PRTGQRVFYF PQGHMEQLEV STNQELNQRI 60
PLFKLSSKIL CRVVNVHLLA EQETDEVYAQ ITLVPESNQT EPTSPDPCPA ELPRPRVHSF 120
CKVLTASDTS THGGFSVLRK HATECLPALD MSKSTPTQEL VAKDLQGFEW RFKHIFRGQP 180
RRHLLTTGWS TFVTSKRLVA GDTFVFLRGN NGELRVGVRR IAPLQSSMPS SVISSQSMHL 240
GVLATASHAV ATQTLFVVYY KPRTSQFIVS VNKYLEAINQ KCNVGMRFKM RFEGDESPEN 300
DKRFSGTILG VEDISPHWVN SNWRSLKVQW DEPASFPRPD RVSSWEIEHI LACVPTTSSQ 360
PAVIKNKRPR QASEVPDLGD TPLAAPTFWD AGLTQCDMTQ LRVMTESKRS DSSSHMRHHN 420
SKSNNNGISM NQTEASWLSS PQLYQDTTDD NKSILAWPIS KPHSERLNND HFLDQVDKNI 480
NKVEAATSYR LFGIDLIDHA RNNSLSVENA SGVASECKTD VNHESDLSKA SKEWNQEQLL 540
VSPKETQSKQ VCSRSCTKVQ MQGVAVGRAV DLTTLDGYDQ LVDELEKMFD IKGQLQHRNK 600
WETVFTDDEG DMMLVGDDPW PEFCNMVKRI FICSSQDVHK LSSGSKLPIS SMGEIVISLN 660
TTET*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 1e-124 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
