PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 561aa MW: 61550.6 Da PI: 8.7991

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G132200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8.1e-16	60	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Glyma.07G132200.1.p 60 KGGWTAQEDETLRNAVAVFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 106 688***************************.**********986 PP
2	Myb_DNA-binding	62.6	7.8e-20	112	158	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v ++G+ W++Ia+ ++ gR +kqc++rw+++l Glyma.07G132200.1.p 112 KGPWTQEEDDKIVELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 158 79****************************.***********97 PP
3	Myb_DNA-binding	51.2	2.9e-16	164	207	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ + gRt++ +k++w++ Glyma.07G132200.1.p 164 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLH-GRTDNAIKNHWNS 207 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.728	55	106	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-14	57	113	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-13	59	108	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-14	60	106	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-21	62	114	IPR009057	Homeodomain-like
CDD	cd00167	3.02E-12	63	106	No hit	No description
PROSITE profile	PS51294	33.151	107	162	IPR017930	Myb domain
SuperFamily	SSF46689	2.16E-31	109	205	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-18	111	160	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-19	112	158	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-16	114	158	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-28	115	161	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-22	162	213	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.338	163	213	IPR017930	Myb domain
SMART	SM00717	7.3E-15	163	211	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	164	207	IPR001005	SANT/Myb domain
CDD	cd00167	1.58E-11	166	209	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MAEVVKSEEC CQENKQSTAA SCSSVSEGSG SAIHKSPGRC SPASTSPSHR RTTGPIRRAK 60 GGWTAQEDET LRNAVAVFKG KSWKKIAEFF PDRSEVQCLH RWQKVLNPEL VKGPWTQEED 120 DKIVELVSKY GPTKWSLIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLE EELALMNAHR 180 IHGNKWAEIA KVLHGRTDNA IKNHWNSSLK KKLDFYLATG RLPPIPKNSP QVPVKDTIRR 240 SASKSMLGCS NKELNAAVET SSETTAISKL DDSGRNQFES SGTVREVGDS SSVPANDSAD 300 SDCVECKPGS SNINPSCSNS EHVSRANFGT TFGPISENSG LNGNSTFEHC TNNGDRSSTR 360 LIGTSSQENP TCGSLCYEPP QLDGSVPIDS LYLNYTCQQN EYCPSPTMSP TGFFTPPRAK 420 GSELCTETPE SILRKAANTF PNTPSILRRR RTGAQTLTSP TKVLKVDNNP HTSNKTERTN 480 DDSGSGHFSG SPASHGYGIG IPNNKAFNAS PPYRLRSKRT AIVKSVEKQL EFAFDKEKND 540 DKRSNVMTED RLHEKKLVVT *

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MAEVVKSEEC CQENKQSTAA SCSSVSEGSG SAIHKSPGRC SPASTSPSHR RTTGPIRRAK  60
GGWTAQEDET LRNAVAVFKG KSWKKIAEFF PDRSEVQCLH RWQKVLNPEL VKGPWTQEED  120
DKIVELVSKY GPTKWSLIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLE EELALMNAHR  180
IHGNKWAEIA KVLHGRTDNA IKNHWNSSLK KKLDFYLATG RLPPIPKNSP QVPVKDTIRR  240
SASKSMLGCS NKELNAAVET SSETTAISKL DDSGRNQFES SGTVREVGDS SSVPANDSAD  300
SDCVECKPGS SNINPSCSNS EHVSRANFGT TFGPISENSG LNGNSTFEHC TNNGDRSSTR  360
LIGTSSQENP TCGSLCYEPP QLDGSVPIDS LYLNYTCQQN EYCPSPTMSP TGFFTPPRAK  420
GSELCTETPE SILRKAANTF PNTPSILRRR RTGAQTLTSP TKVLKVDNNP HTSNKTERTN  480
DDSGSGHFSG SPASHGYGIG IPNNKAFNAS PPYRLRSKRT AIVKSVEKQL EFAFDKEKND  540
DKRSNVMTED RLHEKKLVVT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	1e-66	59	213	5	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-66	59	213	5	159	MYB PROTO-ONCOGENE PROTEIN
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.9260	0.0	cotyledon\| leaf\| pod\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269\|PubMed:26069325}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250\|UniProtKB:Q94FL9, ECO:0000269\|PubMed:26069325}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G132200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529095.1	0.0	transcription factor MYB3R-3
Refseq	XP_028240295.1	0.0	transcription factor MYB3R-3-like
Swissprot	Q8H1P9	1e-156	MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBL	A0A445JW75	0.0	A0A445JW75_GLYSO; Transcription factor MYB3R-3
STRING	GLYMA07G15820.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6616	34	49
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.2	1e-148	myb domain protein 3r-3

Link Out ? help Back to Top
Phytozome	Glyma.07G132200.1.p
Entrez Gene	100793280

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] Chen P, et al. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]