PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G130400.2.p
Common NameGLYMA_07G130400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1067aa    MW: 118348 Da    PI: 6.9983
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G130400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22129230199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ a+++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Glyma.07G130400.2.p 129 FCKQLTASDTSTHGGFSVPRRAADKIfppldySMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI- 216
                          99*****************************9545444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Glyma.07G130400.2.p 217 -RDEKQHLLLGIRRA 230
                          .5689999****997 PP
2Auxin_resp119.72.2e-39255338183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+v+YnPr+s+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Glyma.07G130400.2.p 255 AAHAAANNSPFTVFYNPRTSPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 338
                          79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-42118258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-40120244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-18128229No hitNo description
PROSITE profilePS5086311.688129231IPR003340B3 DNA binding domain
PfamPF023623.1E-20129230IPR003340B3 DNA binding domain
SMARTSM010191.9E-21129231IPR003340B3 DNA binding domain
PfamPF065072.7E-34255338IPR010525Auxin response factor
PROSITE profilePS5174523.0189981066IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MKTTQQPEAP QGDPCEEKKK SINPELWQAC AGPLVNLPPS GTHVIYFPQG HSEQVAASLN  60
KDPHSQIPNY PNLPSKLLCL LHNLTLLADP ETDEVYAQIT LQPVPSFDKD ALLRSDLALK  120
SSKPQPDFFC KQLTASDTST HGGFSVPRRA ADKIFPPLDY SMQPPAQELV ARDLHDTVWT  180
FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QHLLLGIRRA NRQPTNISSS  240
VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRTSPSEFVI PLAKYYKSVY SHQPSLGMRF  300
RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSLWEIEP  360
VTAPFFICPP PFFRSKRPRQ PGMPDDELSD FDNIFKRTMP WLGDDMCMKD PQGLPGLSLA  420
QWMNMQQNPA LANSLQPNYA PSLSGSILQN IPGADISRQL GFSAPQISQS DNVALNTQRL  480
LQTAQQLDHL QKLPSTSSTL GTVLLPQQQL GDITQQPRQN LANQTIPQGQ VQSQLLHPQN  540
MVQTNNILQQ QQPSIQNHQL HRSLSQNPSQ QQTTIGQNQP QNLIQSPMPD HVQQLQMSDN  600
QIQLQLLQKL QQQKQTLLAQ QTALQQPTQL TQIQDQQRQL LDKTHNLSRA LTPGQVLEIP  660
HIIQNSLPEA NSISNQMTKA NCQSNIQFSQ QPKLQQQQQP GMVSEMPGHM ALLPTATTNQ  720
LSAGGSSIVT GAGGAGQSVI TDDVPSRSTS PSTNNCTNAL PQLINSRFPR STMVGDDMAH  780
SAATILSSSA LETSSSNANM LKDLQPKFEV KPSLNISKIQ NQGHFAPHTY LNGNAAHTDC  840
LDTSSSTTSV CLSQSDAHMN QNSNPLSYNR QSMLFRDNNQ DGEVQADARS NIPYANNIDS  900
QIGMPLNPDS LLTKGTLRLG KYLSNNFSSE GMLGNYENNR DAQQELSSSM VSQTFGVPDM  960
AFNSIDSTID DSNFLNSGPW APPPAPPPLP PAQFQRMRTY TKVYKRGAVG RSIDITRYSG  1020
YEELKKDLAR RFGIEGQLED RQRIGWKLVY VDHESDVLLV GDDPWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621835947388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.189700.0cotyledon| leaf| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G130400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529091.10.0auxin response factor 19
RefseqXP_028240273.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0R0JDJ50.0A0A0R0JDJ5_SOYBN; Auxin response factor
STRINGGLYMA07G15640.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19