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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G130400.2.p | ||||||||
Common Name | GLYMA_07G130400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 1067aa MW: 118348 Da PI: 6.9983 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.6 | 2e-22 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ a+++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Glyma.07G130400.2.p 129 FCKQLTASDTSTHGGFSVPRRAADKIfppldySMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI- 216 99*****************************9545444.38************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++++l+++++r+ Glyma.07G130400.2.p 217 -RDEKQHLLLGIRRA 230 .5689999****997 PP | |||||||
2 | Auxin_resp | 119.7 | 2.2e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPr+s+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+ Glyma.07G130400.2.p 255 AAHAAANNSPFTVFYNPRTSPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 338 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-42 | 118 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-40 | 120 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-18 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 11.688 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-20 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-21 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-34 | 255 | 338 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.018 | 998 | 1066 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1067 aa Download sequence Send to blast |
MKTTQQPEAP QGDPCEEKKK SINPELWQAC AGPLVNLPPS GTHVIYFPQG HSEQVAASLN 60 KDPHSQIPNY PNLPSKLLCL LHNLTLLADP ETDEVYAQIT LQPVPSFDKD ALLRSDLALK 120 SSKPQPDFFC KQLTASDTST HGGFSVPRRA ADKIFPPLDY SMQPPAQELV ARDLHDTVWT 180 FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QHLLLGIRRA NRQPTNISSS 240 VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRTSPSEFVI PLAKYYKSVY SHQPSLGMRF 300 RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSLWEIEP 360 VTAPFFICPP PFFRSKRPRQ PGMPDDELSD FDNIFKRTMP WLGDDMCMKD PQGLPGLSLA 420 QWMNMQQNPA LANSLQPNYA PSLSGSILQN IPGADISRQL GFSAPQISQS DNVALNTQRL 480 LQTAQQLDHL QKLPSTSSTL GTVLLPQQQL GDITQQPRQN LANQTIPQGQ VQSQLLHPQN 540 MVQTNNILQQ QQPSIQNHQL HRSLSQNPSQ QQTTIGQNQP QNLIQSPMPD HVQQLQMSDN 600 QIQLQLLQKL QQQKQTLLAQ QTALQQPTQL TQIQDQQRQL LDKTHNLSRA LTPGQVLEIP 660 HIIQNSLPEA NSISNQMTKA NCQSNIQFSQ QPKLQQQQQP GMVSEMPGHM ALLPTATTNQ 720 LSAGGSSIVT GAGGAGQSVI TDDVPSRSTS PSTNNCTNAL PQLINSRFPR STMVGDDMAH 780 SAATILSSSA LETSSSNANM LKDLQPKFEV KPSLNISKIQ NQGHFAPHTY LNGNAAHTDC 840 LDTSSSTTSV CLSQSDAHMN QNSNPLSYNR QSMLFRDNNQ DGEVQADARS NIPYANNIDS 900 QIGMPLNPDS LLTKGTLRLG KYLSNNFSSE GMLGNYENNR DAQQELSSSM VSQTFGVPDM 960 AFNSIDSTID DSNFLNSGPW APPPAPPPLP PAQFQRMRTY TKVYKRGAVG RSIDITRYSG 1020 YEELKKDLAR RFGIEGQLED RQRIGWKLVY VDHESDVLLV GDDPWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 18 | 359 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18970 | 0.0 | cotyledon| leaf| root| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G130400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529091.1 | 0.0 | auxin response factor 19 | ||||
Refseq | XP_028240273.1 | 0.0 | auxin response factor 19-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A0R0JDJ5 | 0.0 | A0A0R0JDJ5_SOYBN; Auxin response factor | ||||
STRING | GLYMA07G15640.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G130400.2.p |