PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 261aa MW: 29148.8 Da PI: 6.2418

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G126900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l+++ +++G+g +W + +++ g++R++k+c++rw++yl Glyma.07G126900.1.p 14 RGPWSPDEDATLKNYLEKHGTGgNWIALPKKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	42.9	1.2e-13	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eEd ++ + G++ W++Ia+ ++ gRt++++k++w++ Glyma.07G126900.1.p 71 FTEEEDNIICTLYDIIGSR-WSLIAAQLP-GRTDNDVKNHWNT 111 9****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.719	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.02E-27	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-23	15	69	IPR009057	Homeodomain-like
CDD	cd00167	5.50E-9	16	62	No hit	No description
PROSITE profile	PS51294	20.205	63	117	IPR017930	Myb domain
SMART	SM00717	1.1E-11	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-12	70	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-22	70	116	IPR009057	Homeodomain-like
CDD	cd00167	1.31E-9	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGRAPCCDKS NVKRGPWSPD EDATLKNYLE KHGTGGNWIA LPKKAGLKRC GKSCRLRWLN 60 YLRPHIKLGG FTEEEDNIIC TLYDIIGSRW SLIAAQLPGR TDNDVKNHWN TKLKKKFLAG 120 NTSSSIATTS NNIVTFSNTS YSHQVEGLVL DQKLNPANWF DSYDVNFELE QTPIPVPFPM 180 PQELEAFNYT GSISCSTAPP PYKEVSLMLS NADKHTLWFG YDQASEDDPN LLEFVLDDLH 240 QMNQGFVFQD KSSQVGPPSG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-25	14	117	7	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G126900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ902863	0.0	DQ902863.1 Glycine max transcription factor MYBJ6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583568.1	0.0	transcription factor MYB36
Refseq	XP_028241474.1	0.0	transcription factor MYB36-like
TrEMBL	A0A445JW38	0.0	A0A445JW38_GLYSO; Transcription factor RAX3
TrEMBL	K7L1E1	0.0	K7L1E1_SOYBN; Uncharacterized protein
STRING	GLYMA07G15250.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-71	myb domain protein 84

Link Out ? help Back to Top
Phytozome	Glyma.07G126900.1.p
Entrez Gene	100779092