PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 360aa MW: 39803.5 Da PI: 7.0452

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G126800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.2e-08	128	149	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f++ G Ck Gd+C FaHg Glyma.07G126800.1.p 128 AACPEFRK-GNCKKGDTCEFAHG 149 78****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.2E-5	124	150	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.112	125	151	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-6	128	149	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	129	151	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	159	182	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.643	159	183	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MMLGEHHRAN PTVHVPPWPT HDDPTAEMYS AFLTNDVNAG EYSPYYLQEA LTALQRFLPS 60 NETDADSDTE AQPDAAVDAY SCDHFRMYEF KVRRCARGRS HDWTECPYAH PGEKARRRDP 120 RKFHYSGAAC PEFRKGNCKK GDTCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH 180 TPEQLRVLPM QSPRSAANSS ESYDGSPMRQ MMSPAAFMSS PAASLSPPES PPVSPSINEM 240 VASLRNLQLG KMKSMPQSRN VSVGSPGYGS PRGSVLRPGF CSLPTTPTQQ PVRSGVNCFD 300 FWDQSCEEEP VMERVESGRG IRAKMFEKLS KENSLEGSGT GSGQGSGAPD VGWVSELVN*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MMLGEHHRAN PTVHVPPWPT HDDPTAEMYS AFLTNDVNAG EYSPYYLQEA LTALQRFLPS  60
NETDADSDTE AQPDAAVDAY SCDHFRMYEF KVRRCARGRS HDWTECPYAH PGEKARRRDP  120
RKFHYSGAAC PEFRKGNCKK GDTCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH  180
TPEQLRVLPM QSPRSAANSS ESYDGSPMRQ MMSPAAFMSS PAASLSPPES PPVSPSINEM  240
VASLRNLQLG KMKSMPQSRN VSVGSPGYGS PRGSVLRPGF CSLPTTPTQQ PVRSGVNCFD  300
FWDQSCEEEP VMERVESGRG IRAKMFEKLS KENSLEGSGT GSGQGSGAPD VGWVSELVN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.25945	0.0	cotyledon\| leaf\| root\| vegetative bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G126800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529068.1	0.0	zinc finger CCCH domain-containing protein 20
Refseq	XP_028240230.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82199	1e-135	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A445JW01	0.0	A0A445JW01_GLYSO; Zinc finger CCCH domain-containing protein 20
TrEMBL	I1KJS9	0.0	I1KJS9_SOYBN; Uncharacterized protein
STRING	GLYMA07G15240.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76
Representative plant	OGRP1170	16	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-134	C3H family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G126800.1.p
Entrez Gene	100778184

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]