PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 318aa MW: 35076.1 Da PI: 7.5376

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G112400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	154	208	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Glyma.07G112400.1.p 154 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTK 208 788899***********************************************98 PP
2	HD-ZIP_I/II	125.1	3.2e-40	154	243	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + Glyma.07G112400.1.p 154 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 242 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Glyma.07G112400.1.p 243 L 243 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	3.5E-34	1	118	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	1.8E-18	128	211	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-18	140	211	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	150	210	IPR001356	Homeobox domain
SMART	SM00389	3.5E-16	152	214	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-16	154	208	IPR001356	Homeobox domain
CDD	cd00086	2.16E-15	154	211	No hit	No description
PROSITE pattern	PS00027	0	185	208	IPR017970	Homeobox, conserved site
SMART	SM00340	9.4E-27	210	253	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.7E-11	210	244	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGEKDDGLGL GLSLKLGWGE NNDNNNNQQQ HPFNVHKPPQ SVPNQRVSVN SLFHFHDENH 60 AMRNTDRSSE MRSFFRGIDV NLPPPPPSAA LAAFDDENGV SSPNSTISSI SGKRSEREGN 120 GEENERTSSS RGGGGSDDDE GGACGGDADA DASRKKLRLS KEQALVLEET FKEHNTLNPK 180 QKQALAKQLN LMPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCENLTEEN RRLQKEVQEL 240 RALKLSPHLY MQMNPPTTLT MCPSCERVAV SSASSSSSAT MPSALPPANL NPVGPTIQRP 300 MPVNPWAAML NQHRGRP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	SRKKLRL
2	202	210	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.12583	0.0	hypocotyl\| leaf\| seed coat\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G112400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583536.1	0.0	homeobox-leucine zipper protein HAT3 isoform X1
Swissprot	P46602	4e-96	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	K7L195	0.0	K7L195_SOYBN; Uncharacterized protein
STRING	GLYMA07G14270.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105
Representative plant	OGRP196	16	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-71	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Glyma.07G112400.1.p
Entrez Gene	100810641

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]