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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G110000.1.p | ||||||||
Common Name | GLYMA_07G110000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 29460 Da PI: 5.3564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 93 | 143 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Glyma.07G110000.1.p 93 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 143 69****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.261 | 93 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-37 | 93 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 93 | 151 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-13 | 93 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 93 | 151 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-10 | 94 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.25E-33 | 94 | 152 | No hit | No description |
PRINTS | PR00367 | 2.2E-10 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MRKRINMESD ADFNSFATSS SSTTPSIFFD TNTSSTSSSS TSPTSNSESC TKEHSKTPQN 60 DSTTSQTSLE NGKDSKGCKK RQIDNSNQNH HPTYRGVRMR NWGKWVSEIR EPRKKSRIWL 120 GTYPTAEMAA RAHDVAALAI KGHSAYLNFP ELAQELPRPV STSPKDIQAA AAKAANTAFE 180 EVRHCQITEE EAEQNQAEQA SSSTLSMDNP QEPSSSHSTI DDDTLFDLPD LFPDGNNGLC 240 SFSSSWHLCA VDSGFRLEES FFYENH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 91 | 150 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19748 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G110000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098911 | 0.0 | BT098911.1 Soybean clone JCVI-FLGm-13A14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014632895.1 | 0.0 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 8e-66 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0B2RQB9 | 0.0 | A0A0B2RQB9_GLYSO; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | I1KJN6 | 0.0 | I1KJN6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G14560.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G110000.1.p |
Publications ? help Back to Top | |||
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