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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G107200.1.p | ||||||||
Common Name | GLYMA_07G107200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 219aa MW: 24333.4 Da PI: 9.2334 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.4 | 8.3e-29 | 50 | 103 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++ Y+eCl+NhAaslG++a+DGCgEf+ + ++ ++ +l+C ACgCHRnFHR+ + Glyma.07G107200.1.p 50 NYLYRECLRNHAASLGSYATDGCGEFTLD-ADSVSSPSLQCMACGCHRNFHRKVT 103 689*************************9.5557999****************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.0E-24 | 51 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.148 | 53 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.0E-24 | 53 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-23 | 53 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 133 | 202 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.61E-15 | 133 | 201 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.4E-29 | 142 | 200 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MPISSLSISM STQYIHQINI YIKTYTTPSL KVTQKPHKQE RKMENSSSSN YLYRECLRNH 60 AASLGSYATD GCGEFTLDAD SVSSPSLQCM ACGCHRNFHR KVTCPVVEGP QVVTGGSGDM 120 MEYSGGEGRM EMGERSGGGS SKKRFRTKFS AEQKEKMLGF AEKLGWKLQR KEVDDEIERF 180 CKSVGVTRQV FKVWMHNHKN NSNSSTNSSV NLSSLTQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-22 | 143 | 205 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28995 | 0.0 | cotyledon| hypocotyl| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G107200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY695730 | 0.0 | AY695730.1 Glycine max zinc finger homeodomain protein SZF-HD2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237557.2 | 1e-130 | zinc finger homeodomain protein SZF-HD2 | ||||
TrEMBL | A0A0R0J1X9 | 1e-163 | A0A0R0J1X9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G12140.2 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-38 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G107200.1.p |