PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G092800.1.p
Common NameGLYMA_07G092800, LOC100804227
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 312aa    MW: 35561.7 Da    PI: 6.5778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G092800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-162471148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W+ eEd ll ++++ +G g+W++ a + g++Rt+k+c++rw++yl
  Glyma.07G092800.1.p 24 RGPWSVEEDYLLTHYIANHGEGRWNLLAIRSGLRRTGKSCRLRWLNYL 71
                         89********************************************97 PP
2Myb_DNA-binding49.78.4e-1677120146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++
  Glyma.07G092800.1.p  77 RGNLTSEEQLLIFELHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 120
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8351971IPR017930Myb domain
SuperFamilySSF466899.73E-2921118IPR009057Homeodomain-like
SMARTSM007171.8E-132373IPR001005SANT/Myb domain
PfamPF002491.4E-142471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-212578IPR009057Homeodomain-like
CDDcd001673.87E-102671No hitNo description
PROSITE profilePS5129424.6872126IPR017930Myb domain
SMARTSM007177.5E-1476124IPR001005SANT/Myb domain
PfamPF002493.4E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2279125IPR009057Homeodomain-like
CDDcd001673.27E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRLAMSTPSK SIICSSEDDY ELRRGPWSVE EDYLLTHYIA NHGEGRWNLL AIRSGLRRTG  60
KSCRLRWLNY LKPNVKRGNL TSEEQLLIFE LHSKWGNRWS KIAQQLPGRT DNEIKNYWRT  120
RIQKQAIYAK FEDHRRAGFV EFVKGLQMTR CLHKSQESSP SAMSIQDQAI PLPFDGVTVP  180
HYSSFGIGTT PTIQITCHGD LNHLNQHEQN SDSEHHNSSC ISSSESANIP NMSQPFGYTT  240
SQFQALDNCD FGMCLYDGYS IDNNSYDRDA LNLTTTMVAG NLELPVFDCQ TLETNRLNKE  300
FASSTWSMDE L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25211264108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G092800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2356960.0AC235696.2 Glycine max clone GM_WBb0070F18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528951.20.0transcription factor MYB62
TrEMBLA0A0R0J1770.0A0A0R0J177_SOYBN; Uncharacterized protein
STRINGGLYMA07G10321.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.12e-62myb domain protein 116