PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G092700.1.p | ||||||||
Common Name | GLYMA_07G092700, Glyma07g10311.1, LOC100803700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 30579.7 Da PI: 6.604 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.9 | 7.7e-08 | 165 | 212 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Glyma.07G092700.1.p 165 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 212 8*************************9....35599999**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-15 | 159 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.96E-9 | 159 | 216 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-15 | 161 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.723 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-5 | 165 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-7 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MAEFTENMQL QSNIRPSQFP FLEIDPSMEL LNQFLGMNQH VLENSNLIPM HNLVPFSCDT 60 FLGPQEPECP GNLEENFPAH VNHNALPISL PIFQAENEIH EGKKRKSMDL PETSSANSTP 120 AVSESGSKIK HSSGRGKRVK SNVTEEEKAK EVVHVRARRG QATDSHSLAE RVRRGKINEK 180 LRCLQNIVPG CYKTMGMAVM LDEIINYVQS LQHQVEFLSL KLTAASTFYD FNSETDALET 240 MQRARASEAK ELGKYKKEGY GGVSFFQPAW PL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G092700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031256 | 0.0 | KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528950.1 | 0.0 | transcription factor BEE 1 | ||||
Refseq | XP_028239852.1 | 0.0 | transcription factor BEE 1-like isoform X1 | ||||
Swissprot | Q8GWK7 | 1e-63 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A445JUK4 | 0.0 | A0A445JUK4_GLYSO; Transcription factor BEE 3 | ||||
TrEMBL | K7L0K7 | 0.0 | K7L0K7_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA07G10311.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3360 | 34 | 67 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73830.1 | 1e-62 | BR enhanced expression 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G092700.1.p |
Entrez Gene | 100803700 |
Publications ? help Back to Top | |||
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