PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G091600.1.p | ||||||||
Common Name | GLYMA_07G091600, LOC100802646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 24866.3 Da PI: 8.9741 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 81.2 | 1.6e-25 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlrr+C+++C+++ + p++q++++ +++k++G++ +l ll+++p + ++++++sl+yeA+ r+ +Pv G++g+++++++ Glyma.07G091600.1.p 4 SCNGCRVLRRGCTTECPIRISLqwinsPNSQSNATLFLAKFYGRQGLLTLLTNAPSQLQQAVLKSLLYEACGRIVNPVLGSTGLLSTGNW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelallke 99 +l++++++++l ++ Glyma.07G091600.1.p 94 HLCEAAVKAVLNGA 107 *****999887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.66 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-21 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRLSCNGCRV LRRGCTTECP IRISLQWINS PNSQSNATLF LAKFYGRQGL LTLLTNAPSQ 60 LQQAVLKSLL YEACGRIVNP VLGSTGLLST GNWHLCEAAV KAVLNGAPIE QAPLDGATSL 120 QLKACNIRHV AKSDKSCGSD TLRKVKSRTT TFKRRAAKSR VESVVAELAE SELDGHGSMS 180 HDSGSGVTRM SENKIVGGEA DSDSVQSVGP ARADGEEMEL QLTLGWGPLK RQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27254 | 0.0 | cotyledon| root| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G091600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340931.1 | 1e-170 | LBD domain-containing transcription factor | ||||
TrEMBL | I1KIX1 | 1e-169 | I1KIX1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G10180.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18189 | 4 | 4 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-57 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G091600.1.p |
Entrez Gene | 100802646 |