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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G091400.2.p | ||||||||
Common Name | COL21, GLYMA_07G091400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 428aa MW: 47923.4 Da PI: 4.6246 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.1 | 1.5e-07 | 16 | 61 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + + +++++C ++ +lC+ C H+ H++v+l Glyma.07G091400.2.p 16 ARACESCLKVRARWYCAADDAFLCHGCDNMVHSAnqlasrHERVKL 61 578******99*********************66889999998875 PP | |||||||
2 | CCT | 67.6 | 3.5e-23 | 374 | 417 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Glyma.07G091400.2.p 374 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 417 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 9.8E-7 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.111 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-5 | 16 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.60E-6 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 9.9E-18 | 374 | 416 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.993 | 374 | 416 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MTNEMKEASA LGARTARACE SCLKVRARWY CAADDAFLCH GCDNMVHSAN QLASRHERVK 60 LQTASSKVNY SVTPKVAWHS GFTRKARTPR HNNNRHSSLK QQQQKKPLHE ERGEEEVFFN 120 NTISLLPLVP ELGSEEPLLN DETEEQLLCR VPVFDAELCS IYNEVKDEVV AAGEEALDLE 180 NFSSEFLPSD TDLAEFTADV KSFLGNGADE DSPDDDEHVK ESELLILDCK EEEGDEEMDE 240 CIDGVLIGAK DAMVKVKDEE ELDADDDTAC HLDSILDMNG EAFNWNIVES ESPAQAQEDE 300 VSKVGTKKDI FLRLNYEEVI TAWASQGSPW TNGTPPKFFN SDDCWLDFLG SNGGNVQCCY 360 GAVGSLRVHA DGGREARVSR YREKRRTRLF AKKIRYEVRK LNAEKRPRMK GRFVKRTPFV 420 GATALPA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 384 | 400 | RRTRLFAKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12751 | 0.0 | leaf | ||||
Gma.62870 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G091400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068903 | 0.0 | HM068903.1 Glycine max CONSTANS-like zinc finger protein (COL21) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239992.2 | 0.0 | CONSTANS-like zinc finger protein | ||||
Refseq | XP_028239840.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A445JUG0 | 0.0 | A0A445JUG0_GLYSO; Zinc finger protein CONSTANS-LIKE 16 isoform A | ||||
TrEMBL | K7L0J7 | 0.0 | K7L0J7_SOYBN; CONSTANS-like zinc finger protein | ||||
STRING | GLYMA07G10161.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 5e-80 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G091400.2.p |